Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 2.7e-146 521.9 260 100.0
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 4.4e-104 381.7 362 60.2
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 2.6e-96 355.9 363 55.9
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 3.4e-96 355.5 364 55.2
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 3.4e-96 355.5 364 55.2
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 4.5e-96 355.1 362 55.8
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 4.5e-96 355.1 365 55.1
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 4.5e-96 355.1 365 55.1
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 5.8e-96 354.8 364 55.2
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 2.2e-95 352.8 368 54.3
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 6.4e-95 351.3 363 54.8
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 1.9e-94 349.7 363 54.5
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.9e-94 349.7 368 54.6
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 5.4e-94 348.2 368 53.3
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 5.4e-94 348.2 367 53.4
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 9.3e-94 347.4 367 54.0
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 9.3e-94 347.4 363 54.8
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 9.3e-94 347.4 367 54.0
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.2e-93 347.1 368 54.1
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 2.7e-93 345.9 367 53.1
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 2.7e-93 345.9 367 53.1
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 2.7e-93 345.9 364 53.3
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 1.0e-92 344.0 361 53.2
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.0e-92 344.0 363 53.2
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 1.3e-92 343.6 367 54.2
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.3e-92 342.8 367 54.5
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 6.7e-92 341.3 360 54.2
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 6.7e-92 341.3 367 54.5
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 6.7e-92 341.3 368 53.0
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 8.7e-92 340.9 367 53.7
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 1.1e-91 340.5 365 53.2
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.9e-91 339.7 367 53.1
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 2.5e-91 339.3 365 52.3
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 2.5e-91 339.3 365 52.9
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 3.3e-91 339.0 368 52.7
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 3.3e-91 339.0 360 53.9
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 4.3e-91 338.6 365 52.3
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 4.3e-91 338.6 363 53.2
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 5.6e-91 338.2 364 53.3
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 5.6e-91 338.2 365 52.9
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 7.4e-91 337.8 362 53.0
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 7.4e-91 337.8 361 54.3
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 1.3e-90 337.0 332 57.5
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 1.3e-90 337.0 368 53.0
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.3e-90 337.0 360 53.6
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.3e-90 337.0 368 51.9
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 1.6e-90 336.7 372 51.3
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 1.6e-90 336.7 368 51.1
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 2.1e-90 336.3 368 53.5
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 2.8e-90 335.9 367 51.8
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 3.7e-90 335.5 364 53.6
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 3.7e-90 335.5 367 52.0
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 4.8e-90 335.1 366 52.7
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 6.2e-90 334.7 361 54.0
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 6.2e-90 334.7 368 51.6
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 8.1e-90 334.3 367 51.0
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 8.1e-90 334.3 365 52.6
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 1.1e-89 334.0 364 52.5
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 1.1e-89 334.0 377 50.7
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 1.1e-89 334.0 365 52.1
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.4e-89 333.6 363 53.2
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 1.8e-89 333.2 364 51.9
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 2.4e-89 332.8 364 52.5
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 2.4e-89 332.8 367 51.2
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 2.4e-89 332.8 363 52.9
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 3.1e-89 332.4 361 53.5
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 3.1e-89 332.4 364 52.2
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 3.1e-89 332.4 368 51.9
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 4.0e-89 332.0 357 53.2
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 4.0e-89 332.0 363 52.6
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 5.3e-89 331.6 362 53.0
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 5.3e-89 331.6 362 52.5
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 6.9e-89 331.3 368 51.1
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 6.9e-89 331.3 363 52.6
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.2e-88 330.5 361 52.6
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.2e-88 330.5 361 52.6
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 2.0e-88 329.7 357 53.2
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 2.0e-88 329.7 359 53.5
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 2.0e-88 329.7 367 51.5
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.0e-88 329.7 361 53.2
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 2.6e-88 329.3 376 50.8
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.6e-88 329.3 361 51.8
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.6e-88 329.3 361 51.8
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 3.4e-88 328.9 363 50.7
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 3.4e-88 328.9 368 50.0
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 7.6e-88 327.8 356 53.1
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 1.3e-87 327.0 367 51.0
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 1.7e-87 326.6 360 52.2
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 2.2e-87 326.2 402 48.3
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 2.2e-87 326.2 365 52.1
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 4.9e-87 325.1 365 53.2
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 4.9e-87 325.1 340 54.1
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 8.4e-87 324.3 359 52.1
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 1.1e-86 323.9 361 52.6
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 1.1e-86 323.9 366 50.0
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.4e-86 323.6 374 51.9
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 1.4e-86 323.6 367 51.8
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 4.2e-86 322.0 353 53.0
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 5.5e-86 321.6 357 52.4
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 9.3e-86 320.9 359 51.5
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 2.1e-85 319.7 364 51.6
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 4.6e-85 318.5 357 51.8
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 7.9e-85 317.8 370 51.1
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 1.3e-84 317.0 362 51.4
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 1.8e-84 316.6 357 51.0
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.8e-84 316.6 368 50.0
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 2.3e-84 316.2 356 50.6
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 2.5e-83 312.8 365 50.1
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 4.3e-83 312.0 357 51.3
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 4.3e-83 312.0 369 48.8
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 5.6e-83 311.6 357 52.1
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 5.6e-83 311.6 367 48.5
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 4.8e-82 308.5 443 43.8
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 4.8e-82 308.5 367 50.4
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.4e-81 307.0 340 50.9
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.0e-79 300.8 342 53.5
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 2.2e-79 299.7 358 49.7
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.9e-79 299.3 362 48.9
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 1.1e-78 297.4 357 48.7
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 1.1e-78 297.4 355 49.9
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.2e-77 293.9 372 47.6
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 1.6e-77 293.5 324 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 1.1e-75 287.3 362 48.3
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 1.1e-75 287.3 362 48.1
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.1e-75 287.3 362 47.5
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.5e-75 287.0 371 46.1
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 2.5e-75 286.2 329 50.8
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 4.3e-75 285.4 264 58.7
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 4.3e-75 285.4 363 48.2
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 9.7e-75 284.3 351 48.7
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 6.3e-74 281.6 371 45.6
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 4.1e-73 278.9 371 45.3
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 9.0e-73 277.7 355 47.6
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 2.6e-72 276.2 363 45.5
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.7e-71 273.5 240 62.9
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 3.8e-71 272.3 240 61.7
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 3.2e-70 269.2 251 58.2
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.9e-68 262.3 317 49.8
Lalb_Chr05g0222791 Lupinus albus HOM05D003247 ORTHO05D003974 3.3e-67 259.2 301 50.2
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 1.2e-64 250.8 240 58.3
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 5.9e-64 248.4 372 43.3
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 7.9e-61 238.0 375 42.1
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 8.8e-60 234.6 234 56.8
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 5.7e-59 231.9 366 43.2
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 1.7e-58 230.3 365 41.4
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 1.4e-57 227.3 487 34.5
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 8.5e-55 218.0 365 40.0
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 7.2e-54 214.9 247 49.0
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 7.9e-53 211.5 307 46.6
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 1.4e-49 200.7 245 48.6
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.8e-49 200.3 359 36.8
SMO351G0618 Selaginella moellendorffii HOM05D003247 ORTHO05D015875 6.5e-47 191.8 261 44.8
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 1.3e-39 167.5 140 64.3
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 5.0e-39 165.6 155 57.4
TPR.G10990 Trifolium pratense HOM05D003247 ORTHO05D003974 3.5e-32 142.9 136 55.9
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.7e-31 140.6 109 71.6
Lalb_Chr05g0224661 Lupinus albus HOM05D003247 ORTHO05D003974 1.1e-30 137.9 130 53.8
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.5e-30 137.5 148 50.7
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.2e-26 123.6 80 77.5
MBI17_g33329_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.5e-22 110.9 220 36.4
RhsimUnG0058500 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.7e-21 105.9 86 68.6
Cc00_g15000 Coffea canephora HOM05D003247 ORTHO05D019032 2.9e-18 96.7 50 84.0
Cc02_g32980 Coffea canephora HOM05D003247 ORTHO05D019032 1.1e-17 94.7 57 75.4
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 2.7e-16 90.1 49 83.7
MBI17_g33793_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 4.6e-16 89.4 173 38.2
Cc00_g15010 Coffea canephora HOM05D003247 ORTHO05D019032 7.8e-16 88.6 54 75.9
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 5.0e-15 85.9 94 50.0
GSVIVG01013301001 Vitis vinifera HOM05D003247 ORTHO05D019032 2.8e-13 80.1 44 81.8
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 6.2e-13 79.0 51 72.5
Cc02_g32990 Coffea canephora HOM05D003247 ORTHO05D019032 1.8e-12 77.4 44 77.3
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 2.3e-12 77.0 44 81.8
Lsat_1_v5_gn_4_5321 Lactuca sativa HOM05D000234 ORTHO05D000335 5.2e-12 75.9 49 79.6
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 3.7e-10 69.7 79 46.8
MBI17_g33330_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 3.7e-10 69.7 36 91.7
Cc00_g15020 Coffea canephora HOM05D003247 ORTHO05D019032 1.9e-09 67.4 51 62.7
Lalb_Chr05g0224651 Lupinus albus HOM05D003247 ORTHO05D015875 4.1e-09 66.2 55 58.2
Cc02_g32970 Coffea canephora HOM05D003247 ORTHO05D019032 1.3e-07 61.2 43 67.4
HanXRQChr15g0485221 Helianthus annuus HOM05D003247 ORTHO05D003974 4.3e-06 56.2 54 55.6


User provided reference genes

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