Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 4.7e-266 920.6 464 100.0
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 6.8e-164 581.3 470 64.7
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.1e-161 572.0 466 64.6
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 7.1e-161 571.2 463 64.6
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.6e-160 570.1 465 64.3
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.3e-159 566.2 465 64.9
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 6.6e-159 564.7 463 64.6
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 6.6e-159 564.7 461 64.6
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.5e-158 563.5 465 64.3
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 2.5e-158 562.8 461 64.2
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 2.1e-157 559.7 506 60.1
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.8e-157 559.3 461 63.3
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.4e-156 557.0 465 62.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.3e-156 556.2 461 63.3
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 6.8e-156 554.7 463 64.1
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 2.0e-155 553.1 463 63.5
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.6e-155 552.7 463 62.4
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 9.9e-155 550.8 468 63.5
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.9e-154 549.3 463 62.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.9e-154 548.5 463 63.3
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.4e-153 546.2 463 63.5
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.2e-152 543.9 465 63.0
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 2.7e-152 542.7 463 63.3
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.6e-152 542.0 460 62.8
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 4.6e-152 542.0 461 62.7
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 2.3e-151 539.7 460 62.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 3.9e-151 538.9 461 61.6
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 5.1e-151 538.5 461 62.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 6.6e-151 538.1 461 62.3
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 8.6e-151 537.7 465 60.6
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 8.6e-151 537.7 465 63.2
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.1e-150 537.3 463 60.3
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.5e-150 536.2 461 62.3
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.5e-150 536.2 461 62.3
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 4.3e-150 535.4 461 61.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 5.6e-150 535.0 463 62.2
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.1e-149 533.1 463 61.6
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 2.8e-149 532.7 461 61.4
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 3.6e-149 532.3 463 62.2
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 8.1e-149 531.2 459 59.9
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 8.1e-149 531.2 463 62.0
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.8e-148 530.0 463 61.3
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 4.0e-148 528.9 465 61.3
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 4.0e-148 528.9 462 61.0
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.5e-147 526.9 464 61.0
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 2.6e-147 526.2 462 61.0
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 4.4e-147 525.4 461 60.7
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 9.9e-147 524.2 463 60.0
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.3e-146 523.9 461 61.4
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 2.9e-146 522.7 466 59.7
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 4.9e-146 521.9 468 59.6
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 8.4e-146 521.2 461 60.5
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.9e-145 520.0 461 61.0
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 3.2e-145 519.2 463 61.3
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 3.2e-145 519.2 461 61.2
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 5.4e-145 518.5 496 57.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 5.4e-145 518.5 463 58.7
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 5.4e-145 518.5 465 59.6
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 7.1e-145 518.1 463 58.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 4.6e-144 515.4 463 59.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 6.0e-144 515.0 463 60.0
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 7.8e-144 514.6 464 60.8
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.0e-143 514.2 463 59.6
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-143 513.8 463 60.0
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.3e-143 513.8 463 60.3
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.3e-143 513.8 463 59.8
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.3e-143 513.8 463 59.8
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 3.0e-143 512.7 461 60.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 5.1e-143 511.9 463 59.6
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.1e-142 510.8 461 60.1
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 4.3e-142 508.8 461 58.6
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 5.6e-142 508.4 458 60.5
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 7.3e-142 508.1 468 59.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.3e-142 508.1 465 59.6
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 9.6e-142 507.7 462 60.2
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.3e-141 507.3 465 59.1
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 2.1e-141 506.5 456 59.4
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 2.8e-141 506.1 458 60.3
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.8e-141 505.4 462 58.7
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.4e-140 503.8 458 60.0
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 2.4e-140 503.1 463 59.6
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 4.0e-140 502.3 458 59.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.3e-140 501.9 462 59.7
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.5e-139 500.4 463 59.4
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 2.0e-139 500.0 442 60.9
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 3.4e-139 499.2 463 59.8
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 4.4e-139 498.8 462 59.5
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 4.4e-139 498.8 485 55.9
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 5.8e-139 498.4 464 57.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.8e-138 495.7 462 59.1
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 4.9e-138 495.4 389 66.8
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.1e-137 494.2 481 55.9
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.2e-137 492.7 391 66.5
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 9.3e-137 491.1 463 58.7
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 1.2e-136 490.7 461 57.9
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 7.9e-136 488.0 389 66.3
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 8.7e-135 484.6 467 57.0
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.5e-134 483.0 463 58.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.8e-133 478.8 463 57.0
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 9.0e-132 474.6 462 57.1
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 2.6e-131 473.0 461 56.0
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 5.8e-131 471.9 391 65.2
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.8e-131 471.9 463 56.6
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 7.6e-131 471.5 390 65.4
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.6e-128 462.2 552 49.6
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.1e-126 457.6 465 55.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.9e-126 456.8 463 55.5
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 7.6e-123 444.9 385 62.1
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 2.7e-120 436.4 386 59.6
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 2.4e-116 423.3 464 51.3
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.1e-113 414.5 462 51.7
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.3e-111 407.5 496 48.2
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.2e-109 398.3 466 49.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 2.0e-107 393.7 366 58.7
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 7.4e-102 375.2 464 47.2
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 5.7e-94 349.0 464 42.5
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.4e-87 327.8 331 54.7
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.2e-70 271.6 330 52.1
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 4.1e-60 236.5 295 48.1
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.7e-58 231.1 188 64.9
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.8e-56 223.8 402 38.8
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 3.2e-52 210.3 390 34.6
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.2e-46 191.8 423 32.2
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 5.4e-44 183.0 163 60.7
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.6e-43 179.9 200 46.5
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.0e-42 177.2 244 45.9
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.6e-41 172.9 114 71.1
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.8e-39 167.9 107 74.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 8.4e-37 159.1 511 29.2
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 3.6e-32 143.7 496 26.8
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.7e-29 134.8 109 64.2
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 4.9e-21 106.7 68 80.9
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.1e-19 101.3 129 48.8
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.5e-17 95.1 101 49.5
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.6e-17 93.2 55 87.3
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 7.1e-12 76.3 481 23.9
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 3.9e-10 70.5 49 79.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.5e-09 68.6 219 28.8
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 2.5e-09 67.8 122 34.4
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.3e-08 65.5 61 55.7
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.1e-08 64.7 97 46.4
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 6.2e-08 63.2 62 53.2
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 8.2e-08 62.8 61 52.5
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 5.3e-07 60.1 87 42.5
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 6.9e-07 59.7 471 20.8
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.5e-06 58.5 476 20.6
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 1.0e-05 55.8 474 20.7
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 1.0e-05 55.8 470 21.1
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 1.0e-05 55.8 451 20.4


User provided reference genes

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