Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 6.9e-51 203.8 109 100.0
CDE08G0808 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 4.9e-20 101.3 56 87.5
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 5.0e-17 91.3 95 52.6
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 7.3e-16 87.4 100 51.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.8e-15 85.5 107 48.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 4.7e-15 84.7 98 50.0
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 8.0e-15 84.0 98 48.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 8.0e-15 84.0 86 50.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.0e-14 83.6 74 56.8
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.0e-14 83.6 74 55.4
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.0e-14 82.0 112 42.9
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.0e-14 81.6 101 48.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 4.0e-14 81.6 95 46.3
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 5.2e-14 81.3 101 48.5
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.8e-14 80.9 102 46.1
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 6.8e-14 80.9 99 46.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 6.8e-14 80.9 99 46.5
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 6.8e-14 80.9 98 46.9
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 6.8e-14 80.9 102 45.1
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 8.9e-14 80.5 80 52.5
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.2e-13 80.1 80 53.8
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.2e-13 80.1 86 50.0
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-13 79.7 74 55.4
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.6e-13 79.0 98 45.9
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.4e-13 78.2 101 48.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 5.8e-13 77.8 75 54.7
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 5.8e-13 77.8 109 44.0
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 5.8e-13 77.8 98 45.9
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 7.5e-13 77.4 74 55.4
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 7.5e-13 77.4 72 54.2
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 7.5e-13 77.4 72 54.2
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 9.8e-13 77.0 86 47.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.3e-12 76.6 88 46.6
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.3e-12 76.6 87 48.3
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.3e-12 76.6 95 46.3
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.7e-12 76.3 81 51.9
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.9e-12 75.5 74 51.4
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.7e-12 75.1 91 40.7
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.7e-12 75.1 106 42.5
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 3.7e-12 75.1 100 45.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 3.7e-12 75.1 87 46.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 4.9e-12 74.7 72 54.2
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 4.9e-12 74.7 100 45.0
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 6.4e-12 74.3 106 39.6
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 8.3e-12 73.9 75 53.3
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 8.3e-12 73.9 91 41.8
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 8.3e-12 73.9 72 54.2
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 8.3e-12 73.9 92 42.4
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 8.3e-12 73.9 64 54.7
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.1e-11 73.6 91 42.9
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.1e-11 73.6 62 61.3
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-11 73.6 90 44.4
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.1e-11 73.6 74 54.1
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.4e-11 73.2 91 41.8
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 1.9e-11 72.8 85 42.4
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.9e-11 72.8 74 50.0
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.9e-11 72.8 104 43.3
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 2.4e-11 72.4 74 50.0
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.4e-11 72.4 76 47.4
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.4e-11 72.4 104 41.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.4e-11 72.4 77 50.6
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 2.4e-11 72.4 75 52.0
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.4e-11 72.4 74 48.6
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 3.2e-11 72.0 74 48.6
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 3.2e-11 72.0 99 42.4
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.2e-11 72.0 108 39.8
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 4.1e-11 71.6 79 46.8
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.1e-11 71.6 88 45.5
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 5.4e-11 71.2 108 43.5
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 5.4e-11 71.2 92 41.3
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 5.4e-11 71.2 60 58.3
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 7.0e-11 70.9 91 44.0
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 7.0e-11 70.9 74 48.6
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 7.0e-11 70.9 74 48.6
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 7.0e-11 70.9 70 48.6
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 7.0e-11 70.9 75 48.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.0e-11 70.9 68 51.5
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 7.0e-11 70.9 81 49.4
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.0e-11 70.9 93 39.8
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 9.2e-11 70.5 74 47.3
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 9.2e-11 70.5 73 49.3
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.2e-10 70.1 73 52.1
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.2e-10 70.1 70 50.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.2e-10 70.1 74 50.0
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.6e-10 69.7 103 40.8
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.6e-10 69.7 72 58.3
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.0e-10 69.3 70 50.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.0e-10 69.3 88 43.2
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.0e-10 69.3 101 43.6
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.0e-10 69.3 67 50.7
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.7e-10 68.9 74 51.4
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.7e-10 68.9 107 38.3
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 2.7e-10 68.9 93 43.0
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.7e-10 68.9 70 52.9
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 3.5e-10 68.6 74 50.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 3.5e-10 68.6 88 40.9
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 3.5e-10 68.6 67 49.3
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.5e-10 68.6 98 39.8
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.5e-10 68.6 98 39.8
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 4.6e-10 68.2 66 51.5
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.6e-10 68.2 92 40.2
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 7.8e-10 67.4 68 48.5
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 7.8e-10 67.4 95 42.1
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.0e-09 67.0 101 43.6
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.3e-09 66.6 70 48.6
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.3e-09 66.6 99 47.5
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 1.3e-09 66.6 74 47.3
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.3e-09 66.6 95 41.1
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.7e-09 66.2 100 41.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.3e-09 65.9 70 50.0
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 2.3e-09 65.9 57 59.6
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.3e-09 65.9 96 37.5
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.3e-09 65.9 93 41.9
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.3e-09 65.9 75 45.3
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 3.0e-09 65.5 86 44.2
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.0e-09 65.5 62 50.0
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 3.9e-09 65.1 74 47.3
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.9e-09 65.1 68 52.9
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 3.9e-09 65.1 73 52.1
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.9e-09 65.1 68 51.5
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 5.0e-09 64.7 97 46.4
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 5.0e-09 64.7 87 43.7
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 6.6e-09 64.3 74 45.9
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 8.6e-09 63.9 56 55.4
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.5e-08 63.2 69 49.3
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.9e-08 62.8 58 53.4
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.3e-08 61.6 75 52.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 5.6e-08 61.2 64 50.0
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 5.6e-08 61.2 75 42.7
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 5.6e-08 61.2 75 42.7
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.5e-08 60.5 61 47.5
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 9.5e-08 60.5 62 45.2
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 9.5e-08 60.5 94 40.4
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 9.5e-08 60.5 63 54.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.2e-07 60.1 74 43.2
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.2e-07 60.1 36 77.8
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.2e-07 60.1 53 56.6
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.1e-07 59.3 100 46.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.1e-07 59.3 68 52.9
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 2.8e-07 58.9 66 48.5
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.6e-07 58.5 36 72.2
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.6e-07 58.5 64 46.9
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 3.6e-07 58.5 100 46.0
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 4.7e-07 58.2 75 41.3
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.0e-07 57.4 60 46.7
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 8.0e-07 57.4 68 47.1
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.4e-06 56.6 103 33.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.1e-06 55.5 36 72.2
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.1e-06 55.5 36 72.2
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.1e-06 55.5 36 72.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.8e-06 54.3 67 49.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.9e-06 53.9 73 39.7
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.9e-06 53.9 73 39.7


User provided reference genes

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