Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0404 Ceratophyllum demersum HOM05D000727 ORTHO05D000541 7.2e-37 156.8 80 100.0
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 9.7e-34 146.4 79 93.7
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 7.9e-28 126.7 76 78.9
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 1.7e-25 119.0 77 72.7
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 1.4e-24 115.9 79 69.6
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 3.4e-23 111.3 84 71.4
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 1.0e-22 109.8 84 70.2
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 8.5e-22 106.7 79 67.1
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 8.5e-22 106.7 79 67.1
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 1.1e-21 106.3 81 65.4
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 1.1e-21 106.3 71 71.8
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 1.9e-21 105.5 86 65.1
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 2.1e-20 102.1 89 61.8
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 2.1e-20 102.1 89 61.8
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 2.1e-20 102.1 89 61.8
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 6.1e-20 100.5 78 60.3
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 6.1e-20 100.5 92 57.6
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 6.1e-20 100.5 91 60.4
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 6.1e-20 100.5 86 62.8
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 6.1e-20 100.5 81 64.2
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 1.4e-19 99.4 88 60.2
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 1.4e-19 99.4 85 60.0
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 2.3e-19 98.6 81 64.2
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 3.0e-19 98.2 80 60.0
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 1.1e-18 96.3 83 62.7
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 1.1e-18 96.3 79 60.8
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 2.6e-18 95.1 92 57.6
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 3.3e-18 94.7 79 60.8
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 3.3e-18 94.7 74 63.5
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 4.4e-18 94.4 78 60.3
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 4.4e-18 94.4 79 59.5
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 4.4e-18 94.4 78 60.3
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 5.7e-18 94.0 82 57.3
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 5.7e-18 94.0 80 61.2
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 5.7e-18 94.0 79 60.8
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 9.7e-18 93.2 84 56.0
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 1.3e-17 92.8 84 61.9
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 1.7e-17 92.4 86 53.5
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 2.2e-17 92.0 70 62.9
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.8e-17 91.7 79 58.2
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 3.7e-17 91.3 85 55.3
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 3.7e-17 91.3 84 57.1
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 6.3e-17 90.5 76 59.2
Zm00001eb198700 Zea mays HOM05D000727 ORTHO05D000541 6.3e-17 90.5 74 62.2
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 8.2e-17 90.1 88 53.4
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.1e-16 89.7 80 58.8
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 1.1e-16 89.7 80 58.8
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 1.1e-16 89.7 63 73.0
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 1.4e-16 89.4 75 56.0
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 1.8e-16 89.0 75 56.0
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 1.8e-16 89.0 79 58.2
Manes.04G161800 Manihot esculenta HOM05D000727 ORTHO05D000541 1.8e-16 89.0 64 70.3
arahy.Tifrunner.gnm1.ann1.BLWT23 Arachis hypogaea HOM05D000727 ORTHO05D000541 2.4e-16 88.6 80 57.5
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 2.4e-16 88.6 79 59.5
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 3.1e-16 88.2 90 55.6
Ca_11274_v3 Cicer arietinum L. HOM05D000727 ORTHO05D000541 3.1e-16 88.2 70 61.4
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 4.1e-16 87.8 84 56.0
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 4.1e-16 87.8 58 69.0
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 5.3e-16 87.4 97 50.5
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 7.0e-16 87.0 70 58.6
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 7.0e-16 87.0 79 58.2
AUR62033129 Chenopodium quinoa HOM05D004517 ORTHO05D005366 9.1e-16 86.7 87 52.9
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 9.1e-16 86.7 70 61.4
MELO3C027239.2 Cucumis melo HOM05D000727 ORTHO05D000541 1.2e-15 86.3 86 55.8
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 1.2e-15 86.3 69 59.4
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 1.6e-15 85.9 70 57.1
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 2.0e-15 85.5 81 54.3
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 2.6e-15 85.1 86 54.7
CANSAT78G1765 Cannabis sativa HOM05D000727 ORTHO05D000541 3.5e-15 84.7 77 55.8
CiPaw.16G001200 Carya illinoinensis HOM05D000727 ORTHO05D000541 4.5e-15 84.3 77 55.8
FAN17G1781 Fragaria x ananassa HOM05D000727 ORTHO05D000541 4.5e-15 84.3 76 57.9
FAN07G1889 Fragaria x ananassa HOM05D000727 ORTHO05D000541 1.0e-14 83.2 76 57.9
RcHm_v2.0_Chr4g0447101 Rosa chinensis HOM05D000727 ORTHO05D000541 1.0e-14 83.2 76 57.9
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 1.3e-14 82.8 93 50.5
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 1.7e-14 82.4 79 51.9
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 1.7e-14 82.4 69 55.1
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 2.2e-14 82.0 78 56.4
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 2.2e-14 82.0 78 56.4
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 2.2e-14 82.0 78 56.4
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 2.9e-14 81.6 79 51.9
FvH4_5g24080 Fragaria vesca HOM05D000727 ORTHO05D000541 3.8e-14 81.3 75 54.7
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 3.8e-14 81.3 64 60.9
QL01p000468 Quercus lobata HOM05D000727 ORTHO05D000541 3.8e-14 81.3 65 61.5
QL01p000554 Quercus lobata HOM05D000727 ORTHO05D000541 3.8e-14 81.3 65 61.5
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 3.8e-14 81.3 73 56.2
FvH4_4g37280 Fragaria vesca HOM05D000727 ORTHO05D000541 5.0e-14 80.9 77 55.8
Psat6g235800 Pisum sativum HOM05D000727 ORTHO05D000541 5.0e-14 80.9 69 56.5
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 8.5e-14 80.1 80 53.8
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 8.5e-14 80.1 80 53.8
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 1.1e-13 79.7 84 53.6
Lalb_Chr06g0164361 Lupinus albus HOM05D000727 ORTHO05D000541 1.5e-13 79.3 68 57.4
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 1.9e-13 79.0 76 52.6
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 2.5e-13 78.6 63 55.6
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 3.2e-13 78.2 86 50.0
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 3.2e-13 78.2 90 50.0
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 4.2e-13 77.8 76 56.6
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 4.2e-13 77.8 69 55.1
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 5.5e-13 77.4 81 54.3
FvH4_4g25270 Fragaria vesca HOM05D000727 ORTHO05D000541 7.2e-13 77.0 77 51.9
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 9.4e-13 76.6 59 61.0
CARHR190090 Cardamine hirsuta HOM05D000727 ORTHO05D000541 9.4e-13 76.6 77 50.6
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 1.2e-12 76.3 64 56.2
C02p60870 Brassica napus HOM05D000727 ORTHO05D000541 3.6e-12 74.7 54 61.1
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 3.6e-12 74.7 54 61.1
unitig_699.g19642 Utricularia gibba HOM05D001166 ORTHO05D000992 4.7e-12 74.3 75 50.7
Manes.11G000650 Manihot esculenta HOM05D000727 ORTHO05D000541 8.0e-12 73.6 57 57.9
arahy.Tifrunner.gnm1.ann1.Z3R5C5 Arachis hypogaea HOM05D000727 ORTHO05D000541 5.2e-11 70.9 75 44.0
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 1.1e-10 69.7 70 48.6
Oeu035648.1 Olea europaea HOM05D000727 ORTHO05D000541 2.0e-10 68.9 67 53.7
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 3.3e-10 68.2 76 44.7
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 7.5e-10 67.0 68 54.4
arahy.Tifrunner.gnm1.ann1.K4HZ0A Arachis hypogaea HOM05D000727 ORTHO05D000541 9.7e-10 66.6 75 44.0
ClCG01G007990 Citrullus lanatus HOM05D000727 ORTHO05D000541 1.3e-09 66.2 116 39.7
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 1.7e-09 65.9 87 42.5
FvH4_4g14340 Fragaria vesca HOM05D000727 ORTHO05D000541 1.7e-09 65.9 78 48.7
FAN12G2363 Fragaria x ananassa HOM05D000727 ORTHO05D000541 2.8e-09 65.1 89 48.3
MD00G1127400 Malus domestica HOM05D000727 ORTHO05D000541 4.8e-09 64.3 113 38.9
FvH4_7g08880 Fragaria vesca HOM05D000727 ORTHO05D000541 6.3e-09 63.9 59 52.5
FAN12G2672 Fragaria x ananassa HOM05D000727 ORTHO05D000541 8.2e-09 63.5 67 49.3
Nitab4.5_0007445g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 8.2e-09 63.5 51 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5706 Anthoceros agrestis HOM05D000727 ORTHO05D000541 1.4e-08 62.8 73 46.6
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 1.8e-08 62.4 56 50.0
FAN12G0447 Fragaria x ananassa HOM05D000727 ORTHO05D000541 2.0e-07 58.9 71 47.9
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 2.2e-06 55.5 69 43.5
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 2.2e-06 55.5 57 43.9
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.2e-06 55.5 63 44.4
Zm00001eb280260 Zea mays HOM05D001818 ORTHO05D001780 2.2e-06 55.5 65 44.6
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 2.9e-06 55.1 74 41.9
Pp3c17_7580 Physcomitrium patens HOM05D000727 ORTHO05D000541 2.9e-06 55.1 53 45.3
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 5.0e-06 54.3 69 46.4


User provided reference genes

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