Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1674.1 838 100.0
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1388.2 838 80.7
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1384.8 838 80.3
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1376.7 838 79.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1369.4 838 80.5
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1362.8 843 79.7
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1353.6 838 78.4
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1353.6 838 78.5
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1343.2 838 78.0
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 840 78.5
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1337.0 838 76.7
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 837 78.3
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1333.2 838 77.4
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 838 77.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 838 77.3
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 838 77.4
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1327.0 838 76.8
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 838 77.0
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1323.9 838 76.5
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 840 77.6
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 838 77.1
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1322.4 838 76.6
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1321.6 838 77.2
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1320.1 826 77.7
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 838 76.8
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 838 77.8
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1313.9 838 77.3
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 838 76.5
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 838 76.8
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1311.6 839 76.9
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1310.4 839 75.9
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 838 77.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1308.9 838 76.7
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1308.1 838 75.8
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 870 74.4
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 840 76.3
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1302.3 838 75.7
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 838 75.8
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 838 75.8
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 868 74.4
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1299.3 845 75.4
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 838 76.3
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1294.6 858 75.1
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 839 75.4
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1292.7 830 76.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 844 76.1
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1290.0 839 76.6
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1289.6 839 75.8
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1289.2 838 75.5
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1288.9 838 76.0
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1286.6 838 75.4
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1285.4 838 75.2
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1285.0 839 75.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1285.0 839 75.8
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 838 75.4
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 838 75.5
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1281.2 838 74.8
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1280.4 839 75.8
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1280.0 915 70.6
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1279.6 839 75.0
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1278.5 839 75.6
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1277.3 838 74.7
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1276.2 840 75.0
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 838 74.7
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 781 78.9
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1273.1 838 74.7
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1272.7 845 74.4
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1271.9 841 74.9
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1271.5 838 74.7
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1267.7 845 74.2
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1267.3 845 74.1
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1266.9 838 74.6
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1265.8 904 70.6
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1264.2 858 73.3
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1257.7 967 66.5
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1254.6 911 69.4
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1254.6 867 72.3
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1250.3 838 73.9
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1245.3 911 69.0
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1241.9 764 78.7
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1240.7 818 76.0
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1239.2 849 72.3
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1224.5 826 74.1
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1219.1 842 72.6
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1214.5 840 71.5
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1206.4 858 69.5
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1204.1 765 76.3
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1203.3 824 73.3
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1189.9 776 75.5
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1187.6 842 71.6
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1184.9 805 72.9
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1182.9 766 75.3
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1175.2 751 76.7
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1175.2 838 69.9
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1169.1 846 68.1
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1160.6 839 70.0
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1158.7 788 72.3
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1142.1 839 68.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1132.5 754 73.7
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1119.0 853 66.0
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1090.1 838 66.3
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1089.3 697 76.3
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1080.1 691 76.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 8.6e-311 1070.1 839 64.2
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 4.4e-310 1067.8 853 63.9
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 3.2e-297 1025.0 654 76.3
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 5.9e-267 924.5 845 59.5
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 4.3e-249 865.1 542 77.5
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.7e-245 853.2 642 67.3
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.3e-210 736.5 513 70.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-197 694.1 418 81.6
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.4e-151 540.4 329 79.9
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.1e-114 417.2 307 66.1
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 5.2e-114 416.4 300 72.3
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.5e-110 403.7 254 78.3
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.7e-104 384.8 285 66.0
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.3e-88 332.0 194 82.0
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.5e-86 323.9 273 60.4
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-82 312.4 388 48.5
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.8e-64 250.8 275 52.4
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.2e-62 245.7 182 69.2
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.0e-52 211.8 139 75.5
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 7.5e-52 209.9 140 73.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.9e-40 171.4 117 70.1
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 5.5e-39 167.2 94 83.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 2.9e-32 144.8 144 52.1
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 4.3e-31 141.0 82 82.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 2.8e-30 138.3 83 78.3
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.7e-27 127.9 76 81.6
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.5e-25 121.3 101 62.4
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.5e-23 115.9 84 66.7
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 8.0e-22 110.2 68 75.0
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.5e-20 105.9 67 76.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 9.8e-20 103.2 74 71.6
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.1e-13 83.2 105 52.4
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 5.4e-10 70.9 51 66.7
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.5e-09 68.2 42 78.6
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 4.3e-07 61.2 41 70.7


User provided reference genes

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