Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.2e-208 729.6 364 100.0
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.8e-149 532.3 350 74.6
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 4.9e-149 531.6 349 73.4
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 4.1e-148 528.5 367 70.6
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 5.4e-148 528.1 368 70.4
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.0e-148 527.7 310 80.3
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 9.2e-148 527.3 351 72.4
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 9.2e-148 527.3 321 77.6
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.6e-147 526.6 323 78.3
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 4.5e-147 525.0 308 79.2
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 4.5e-147 525.0 366 71.9
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.0e-146 523.9 352 73.0
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.3e-146 523.5 352 71.6
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.7e-146 523.1 321 77.9
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 2.3e-146 522.7 356 72.2
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 2.3e-146 522.7 353 72.5
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 2.3e-146 522.7 351 72.6
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 2.3e-146 522.7 355 72.4
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 2.9e-146 522.3 364 70.1
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.9e-146 522.3 308 80.5
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 3.8e-146 521.9 353 73.1
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 6.6e-146 521.2 351 71.2
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.5e-145 520.0 351 72.6
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.9e-145 519.6 351 72.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 5.6e-145 518.1 344 72.7
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 5.6e-145 518.1 333 74.5
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 9.5e-145 517.3 345 72.5
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.6e-144 516.5 344 72.4
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 2.1e-144 516.2 294 81.6
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.1e-144 516.2 355 71.8
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.6e-144 515.4 355 71.0
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 4.7e-144 515.0 352 70.2
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 4.7e-144 515.0 348 73.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 6.1e-144 514.6 352 70.2
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 8.0e-144 514.2 344 73.0
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 8.0e-144 514.2 341 73.6
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.0e-143 513.8 368 69.6
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.4e-143 513.5 299 79.6
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.4e-143 513.5 348 71.6
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.1e-143 512.3 358 67.9
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 3.1e-143 512.3 347 72.6
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 5.2e-143 511.5 373 69.2
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 5.2e-143 511.5 299 79.3
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 5.2e-143 511.5 318 75.8
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 5.2e-143 511.5 339 72.3
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 5.2e-143 511.5 345 71.9
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 6.8e-143 511.1 372 68.3
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-142 510.4 358 67.6
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.5e-142 510.0 318 76.7
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 2.0e-142 509.6 304 78.6
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 2.6e-142 509.2 310 77.4
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.6e-142 509.2 351 72.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.6e-142 509.2 349 69.6
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 7.5e-142 507.7 355 70.4
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.5e-142 507.7 368 70.1
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 7.5e-142 507.7 339 71.7
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 9.8e-142 507.3 299 78.9
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.3e-141 506.9 367 68.4
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.7e-141 506.5 348 70.4
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 1.7e-141 506.5 309 76.7
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.2e-141 506.1 299 78.9
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.2e-141 506.1 347 71.5
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.7e-141 505.4 350 71.4
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.9e-141 505.0 354 70.6
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 6.4e-141 504.6 299 78.3
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 8.3e-141 504.2 294 79.3
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 8.3e-141 504.2 365 67.9
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.1e-140 503.8 294 79.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.4e-140 503.4 359 68.8
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-140 503.1 317 74.8
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-140 503.1 350 69.7
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-140 503.1 350 69.1
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-140 503.1 350 69.7
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.9e-140 503.1 352 69.3
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.9e-140 503.1 369 67.8
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.4e-140 502.7 308 76.9
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 3.2e-140 502.3 358 67.9
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 3.2e-140 502.3 348 71.8
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 5.4e-140 501.5 346 70.5
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 5.4e-140 501.5 355 68.2
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.2e-139 500.4 355 68.2
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.6e-139 500.0 369 66.7
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 6.0e-139 498.0 355 67.3
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 7.8e-139 497.7 352 69.3
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.7e-138 496.5 374 67.9
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 6.6e-138 494.6 312 73.1
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 6.6e-138 494.6 348 68.7
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-137 493.8 347 70.0
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.1e-137 493.8 372 66.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.5e-137 493.4 355 67.3
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.3e-137 492.3 346 69.9
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 4.3e-137 491.9 349 68.2
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 4.3e-137 491.9 316 73.4
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 7.3e-137 491.1 352 68.2
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 9.5e-137 490.7 345 68.7
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 9.5e-137 490.7 357 66.4
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.6e-136 490.0 352 67.6
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 3.6e-136 488.8 302 75.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 3.6e-136 488.8 302 75.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 8.0e-136 487.6 355 66.5
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 2.3e-135 486.1 313 72.2
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.8e-134 481.5 354 67.8
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.1e-131 473.0 343 69.1
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.9e-130 468.8 469 54.4
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.8e-128 462.6 381 63.8
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.2e-127 458.4 371 62.5
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 7.1e-124 448.0 313 71.2
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.2e-123 447.2 294 73.1
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 2.7e-123 446.0 279 76.3
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.6e-120 436.8 255 80.0
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 8.9e-119 431.0 288 72.6
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.3e-117 427.2 286 69.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 6.4e-117 424.9 286 68.5
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.0e-114 417.5 325 61.2
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.0e-114 416.0 316 65.2
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 9.0e-111 404.4 296 68.9
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-105 387.5 267 71.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.1e-103 379.4 243 73.3
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 4.0e-103 379.0 286 63.3
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 5.3e-103 378.6 285 63.9
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 7.4e-97 358.2 266 66.2
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 6.2e-96 355.1 290 59.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.2e-91 340.9 229 69.4
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 7.9e-91 338.2 294 56.8
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 4.8e-88 328.9 236 65.3
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 3.4e-86 322.8 253 61.7
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 8.4e-85 318.2 291 59.1
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 5.1e-82 308.9 288 55.9
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.1e-75 287.0 168 81.5
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 5.9e-70 268.9 164 73.8
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.1e-60 238.0 230 52.6
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.8e-55 220.7 156 65.4
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 2.6e-54 216.9 127 79.5
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.3e-50 203.8 252 47.2
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 4.0e-50 203.0 146 67.1
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 3.2e-44 183.3 146 62.3
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.6e-43 181.0 100 81.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 8.8e-42 175.3 146 61.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.2e-40 170.6 106 70.8
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 5.9e-38 162.5 197 46.7
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.4e-34 151.4 108 64.8
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.5e-28 130.6 72 86.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 6.0e-22 109.4 64 81.2
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.7e-21 107.8 100 54.0
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 3.1e-18 97.1 67 65.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 3.1e-18 97.1 67 65.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.6e-17 94.0 63 69.8
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 7.1e-15 85.9 87 52.9
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 7.1e-15 85.9 44 81.8
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 3.5e-14 83.6 43 83.7
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.1e-12 78.6 41 85.4
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.2e-11 75.1 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 8.9e-10 68.9 40 82.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 3.2e-07 60.5 58 55.2


User provided reference genes

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