Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.4e-159 566.2 290 100.0
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.7e-75 285.8 272 56.6
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 8.8e-69 264.6 264 54.5
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.3e-67 260.8 274 51.1
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.4e-66 257.3 280 51.4
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 7.7e-65 251.5 274 51.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.3e-64 250.8 269 51.3
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.2e-64 250.0 273 51.3
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.9e-64 249.6 266 51.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 3.8e-64 249.2 282 50.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 5.0e-64 248.8 274 50.0
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.9e-63 246.9 274 51.8
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 9.5e-63 244.6 276 45.7
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.6e-62 243.8 278 49.6
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.7e-62 242.3 276 48.6
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.5e-60 237.3 254 50.8
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 4.4e-60 235.7 278 51.4
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 4.4e-60 235.7 270 47.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 7.5e-60 235.0 263 50.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.5e-60 235.0 263 50.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 9.8e-60 234.6 268 49.3
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.3e-59 234.2 263 48.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.7e-59 233.8 268 50.0
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 2.2e-59 233.4 263 48.3
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.9e-59 232.3 265 47.2
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 4.9e-59 232.3 274 48.2
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 6.3e-59 231.9 265 47.2
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.3e-59 231.5 263 49.4
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.4e-58 230.7 278 50.7
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.4e-58 229.9 263 49.4
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.1e-58 229.2 275 48.4
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 4.1e-58 229.2 271 48.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 7.0e-58 228.4 259 48.6
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 9.2e-58 228.0 269 48.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 4.5e-57 225.7 263 46.4
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 5.9e-57 225.3 288 46.5
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.0e-56 224.6 268 47.4
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.7e-56 223.8 264 48.5
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 3.8e-56 222.6 272 43.8
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 8.6e-56 221.5 276 46.4
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 8.6e-56 221.5 278 43.9
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.9e-55 220.3 294 44.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 3.3e-55 219.5 262 46.6
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 5.6e-55 218.8 282 46.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 7.3e-55 218.4 287 44.6
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 4.7e-54 215.7 281 45.6
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 8.0e-54 214.9 277 45.5
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.3e-53 213.4 287 44.3
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.0e-53 212.6 265 46.4
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.0e-53 212.6 267 44.9
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.2e-53 212.2 264 43.6
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 6.8e-53 211.8 267 45.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 8.9e-53 211.5 262 45.8
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.2e-52 211.1 280 42.5
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.2e-52 211.1 266 47.0
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 2.0e-52 210.3 269 43.9
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.4e-52 209.5 238 49.6
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 4.4e-52 209.1 255 45.5
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 4.4e-52 209.1 267 43.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 9.8e-52 208.0 266 45.5
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.3e-51 207.6 248 47.6
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 2.9e-51 206.5 234 47.9
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.7e-51 206.1 269 43.5
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 4.9e-51 205.7 276 43.5
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.1e-50 204.5 258 44.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.2e-50 203.0 262 45.4
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 9.2e-50 201.4 268 40.7
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 3.5e-49 199.5 274 43.8
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 5.9e-49 198.7 294 42.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.0e-48 198.0 265 42.3
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.5e-47 193.4 265 44.2
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 7.3e-47 191.8 264 42.0
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.6e-46 190.7 265 43.8
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 6.2e-46 188.7 248 44.4
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 4.4e-44 182.6 175 56.6
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 5.8e-44 182.2 204 49.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 9.8e-44 181.4 163 58.9
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.3e-43 181.0 265 41.5
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.7e-43 180.6 162 56.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 3.7e-43 179.5 267 40.4
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.2e-41 174.5 147 59.2
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.9e-40 169.5 265 38.9
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 5.0e-40 169.1 265 38.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 5.0e-40 169.1 200 49.5
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.5e-39 166.8 201 49.3
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 3.3e-39 166.4 262 39.3
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.6e-39 165.6 267 38.6
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 8.1e-38 161.8 228 41.2
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 4.0e-37 159.5 152 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.7e-35 152.9 256 34.8
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.1e-33 147.1 216 38.0
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 7.8e-33 145.2 213 39.0
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.0e-32 144.8 225 38.2
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 5.1e-32 142.5 262 35.1
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 2.5e-31 140.2 192 42.2
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.2e-30 137.9 137 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 8.9e-29 131.7 253 34.4
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.2e-28 131.3 157 43.3
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.7e-27 127.5 264 34.1
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 4.9e-27 125.9 206 36.4
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 1.1e-26 124.8 206 37.4
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.2e-25 121.3 254 33.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.1e-25 120.6 193 40.9
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.8e-25 118.6 108 58.3
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.3e-24 117.9 261 31.0
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.1e-23 114.8 208 34.6
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.3e-23 113.2 189 34.4
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 7.3e-23 112.1 202 35.6
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.8e-22 110.2 233 33.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.5e-20 104.4 107 50.5
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.0e-20 104.0 186 32.8
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 3.4e-20 103.2 89 56.2
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 3.8e-19 99.8 109 46.8
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.1e-18 98.2 123 45.5
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.4e-18 97.1 274 28.8
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 7.8e-17 92.0 80 57.5
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 7.8e-17 92.0 80 57.5
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.7e-16 90.9 83 56.6
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 4.8e-14 82.8 101 40.6
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 2.4e-13 80.5 56 71.4
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 3.1e-13 80.1 51 68.6
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 6.9e-13 79.0 56 69.6
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.4e-12 76.6 58 67.2
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 1.9e-10 70.9 132 34.8
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.2e-10 70.1 56 62.5
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.9e-07 60.8 85 40.0
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 7.4e-07 58.9 98 37.8
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 2.1e-06 57.4 156 28.2


User provided reference genes

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