Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.0e-87 325.9 274 100.0
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 8.4e-45 184.9 274 62.4
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.9e-44 183.7 278 61.9
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 7.1e-44 181.8 278 66.9
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 9.6e-41 171.4 204 71.1
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 2.4e-39 166.8 289 57.8
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 5.3e-39 165.6 274 67.5
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.0e-38 163.7 283 63.6
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.0e-38 163.7 272 58.5
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 8.4e-37 158.3 277 63.9
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 2.7e-35 153.3 159 77.4
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.7e-35 153.3 287 50.9
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 7.4e-33 145.2 304 60.9
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.8e-32 143.3 283 59.7
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 4.8e-32 142.5 288 61.1
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 6.2e-32 142.1 204 68.1
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.4e-31 141.0 278 59.0
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.0e-31 139.4 283 58.7
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.0e-30 137.1 280 64.3
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 5.8e-30 135.6 278 59.4
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.0e-29 134.8 283 60.1
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.7e-29 134.0 279 60.6
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.7e-29 134.0 283 61.5
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.2e-29 133.7 285 51.2
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 8.4e-29 131.7 276 62.0
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.4e-28 131.0 188 69.1
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.5e-28 130.2 204 66.2
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 4.2e-28 129.4 277 60.6
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 4.2e-28 129.4 283 58.0
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 4.2e-28 129.4 279 61.6
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 5.5e-28 129.0 159 71.7
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 9.3e-28 128.3 154 73.4
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 9.3e-28 128.3 278 55.0
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.2e-27 127.9 204 60.8
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 2.1e-27 127.1 281 58.7
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 2.1e-27 127.1 279 58.4
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.7e-27 126.7 279 60.2
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 3.5e-27 126.3 276 61.2
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 4.6e-27 125.9 284 50.7
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 3.9e-26 122.9 157 70.1
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 5.1e-26 122.5 87 79.3
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 8.7e-26 121.7 307 55.7
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.5e-25 120.9 281 62.3
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.3e-25 119.8 204 62.7
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 7.4e-25 118.6 277 58.8
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 7.4e-25 118.6 295 57.3
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 2.2e-24 117.1 272 64.3
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.2e-24 117.1 281 55.5
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 6.3e-24 115.5 280 58.9
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 8.2e-24 115.2 276 52.5
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 2.4e-23 113.6 271 57.6
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 3.1e-23 113.2 206 65.5
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.1e-23 113.2 181 62.4
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.1e-23 113.2 272 60.7
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 4.1e-23 112.8 155 69.0
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.3e-23 112.5 188 61.7
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 6.9e-23 112.1 345 49.9
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.9e-23 112.1 156 63.5
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 6.9e-23 112.1 274 55.5
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.2e-22 111.3 275 61.8
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.5e-22 110.9 202 54.0
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.0e-22 110.5 276 56.9
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 2.6e-22 110.2 304 60.5
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.9e-22 109.0 283 56.2
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.9e-22 109.0 280 58.6
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 7.6e-22 108.6 284 53.5
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.0e-21 108.2 200 56.5
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 1.7e-21 107.5 159 64.2
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 1.7e-21 107.5 159 64.2
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.7e-21 107.5 205 48.3
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.2e-21 107.1 129 73.6
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 2.2e-21 107.1 159 62.9
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 3.8e-21 106.3 308 47.7
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 5.0e-21 105.9 87 73.6
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.5e-21 105.5 271 52.4
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 8.5e-21 105.1 206 57.3
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 8.5e-21 105.1 278 60.1
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.1e-20 104.8 175 53.1
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.4e-20 104.4 271 51.7
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.9e-20 104.0 77 77.9
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.9e-20 104.0 279 54.5
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.9e-20 104.0 204 55.9
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 2.5e-20 103.6 283 56.5
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.2e-20 103.2 204 52.9
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.2e-20 103.2 262 49.6
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.2e-20 103.2 96 68.8
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 5.5e-20 102.4 201 54.7
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 9.3e-20 101.7 188 62.2
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 9.3e-20 101.7 272 57.4
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 9.3e-20 101.7 278 60.8
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.2e-19 101.3 159 62.9
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.6e-19 100.9 159 64.2
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.7e-19 100.1 282 51.8
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 3.6e-19 99.8 205 55.1
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 6.1e-19 99.0 207 54.6
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.1e-19 99.0 276 56.2
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.1e-19 99.0 280 48.6
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.1e-19 99.0 277 49.5
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.4e-18 97.8 205 56.1
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 1.8e-18 97.4 261 59.0
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.1e-17 94.7 154 64.9
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 1.9e-17 94.0 70 71.4
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 5.7e-17 92.4 213 48.4
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.4e-17 92.0 179 53.1
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 7.4e-17 92.0 135 51.1
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.7e-16 90.9 155 63.2
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 2.2e-16 90.5 273 53.8
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.8e-16 90.1 149 62.4
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 3.7e-16 89.7 213 52.1
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.7e-16 89.7 206 51.9
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.7e-16 89.7 156 49.4
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 4.8e-16 89.4 213 47.4
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 4.8e-16 89.4 177 60.5
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 4.8e-16 89.4 188 63.3
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 6.3e-16 89.0 218 53.2
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.8e-15 87.4 155 49.7
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.4e-15 87.0 128 46.1
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 3.1e-15 86.7 83 65.1
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 4.1e-15 86.3 281 56.2
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 4.1e-15 86.3 148 61.5
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 5.3e-15 85.9 276 55.8
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 9.1e-15 85.1 167 56.3
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 1.2e-14 84.7 205 54.1
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 1.5e-14 84.3 314 43.9
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.5e-14 84.3 274 56.2
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.6e-14 83.6 191 51.3
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 4.5e-14 82.8 167 55.7
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 4.5e-14 82.8 132 47.0
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 1.0e-13 81.6 74 63.5
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.0e-13 81.6 279 54.5
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 1.0e-13 81.6 154 59.1
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.3e-13 81.3 231 52.4
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 2.2e-13 80.5 125 48.0
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 3.8e-13 79.7 206 52.9
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 5.0e-13 79.3 158 56.3
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.1e-12 78.2 159 58.5
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 1.9e-12 77.4 201 51.2
arahy.Tifrunner.gnm1.ann1.0YHR6E Arachis hypogaea HOM05D003347 ORTHO05D003821 2.5e-12 77.0 152 63.2
arahy.Tifrunner.gnm1.ann1.3X6E38 Arachis hypogaea HOM05D003347 ORTHO05D003821 2.5e-12 77.0 152 63.2
Os10g0214400 Oryza sativa ssp. japonica HOM05D003347 ORTHO05D003821 3.2e-12 76.6 176 50.6
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 4.2e-12 76.3 360 38.1
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 9.4e-12 75.1 74 59.5
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 1.2e-11 74.7 268 50.7
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.2e-11 74.7 158 46.8
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.2e-11 74.7 63 71.4
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.6e-11 73.2 178 57.9
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.6e-11 73.2 144 62.5
Ca_17010_v3 Cicer arietinum L. HOM05D003347 ORTHO05D003821 4.7e-11 72.8 152 59.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 6.1e-11 72.4 159 56.0
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 1.4e-10 71.2 213 47.9
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.4e-10 71.2 133 60.9
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 1.8e-10 70.9 195 47.7
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.9e-10 69.7 110 65.5
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 3.9e-10 69.7 225 50.2
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.7e-10 68.9 196 49.5
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 8.8e-10 68.6 133 51.1
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.8e-10 68.6 206 51.5
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.0e-09 67.4 133 56.4
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 2.6e-09 67.0 281 49.1
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 3.3e-09 66.6 183 50.8
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 4.4e-09 66.2 205 51.7
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.4e-09 66.2 205 51.7
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 4.4e-09 66.2 183 48.1
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 5.7e-09 65.9 193 52.8
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 5.7e-09 65.9 72 56.9
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.7e-09 65.1 73 50.7
SMO119G0223 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 9.7e-09 65.1 157 54.1
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 1.3e-08 64.7 50 66.0
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 2.8e-08 63.5 213 45.1
unitig_26.g9555 Utricularia gibba HOM05D003347 ORTHO05D003821 4.8e-08 62.8 276 44.9
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 1.1e-07 61.6 204 43.6
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.4e-07 61.2 178 56.7
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.8e-07 60.8 305 52.8
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 3.1e-07 60.1 203 46.8
Thhalv10014512m.g Eutrema salsugineum HOM05D012923 ORTHO05D014747 5.3e-07 59.3 147 40.1
Actinidia06603 Actinidia chinensis HOM05D003347 ORTHO05D003821 9.1e-07 58.5 277 47.7
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 9.1e-07 58.5 190 50.5
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 1.5e-06 57.8 116 48.3
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 4.5e-06 56.2 155 52.9


User provided reference genes

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