Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0308 Ceratophyllum demersum HOM05D001499 ORTHO05D130059 1.5e-47 192.6 102 100.0
CDE06G1500 Ceratophyllum demersum HOM05D001499 ORTHO05D001560 1.5e-26 122.9 68 86.8
ECA246G1197 Erigeron canadensis HOM05D001499 ORTHO05D001560 1.6e-09 66.2 48 58.3
Ciclev10025834m.g Citrus clementina HOM05D001499 ORTHO05D001560 2.8e-09 65.5 69 47.8
Sed0016997 Sechium edule HOM05D001499 ORTHO05D001560 2.8e-09 65.5 45 64.4
Nn5g31060 Nelumbo nucifera HOM05D001499 ORTHO05D001560 4.7e-09 64.7 52 55.8
DCAR_003000 Daucus carota HOM05D001499 ORTHO05D001560 6.2e-09 64.3 41 68.3
Dinv40221 Davidia involucrata HOM05D001499 ORTHO05D001560 6.2e-09 64.3 41 68.3
Nn6g31608 Nelumbo nucifera HOM05D001499 ORTHO05D001560 6.2e-09 64.3 38 73.7
Lj2A506G44 Lonicera japonica HOM05D001499 ORTHO05D001560 8.0e-09 63.9 38 73.7
Atru.chr3.1928 Acer truncatum HOM05D001499 ORTHO05D001560 1.1e-08 63.5 47 57.4
CSS0013693 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 1.1e-08 63.5 40 67.5
Cpa.g.sc6.349 Carica papaya HOM05D001499 ORTHO05D001560 1.1e-08 63.5 47 57.4
CsaV3_3G000140 Cucumis sativus L. HOM05D001499 ORTHO05D001560 1.1e-08 63.5 45 60.0
CsaV3_UNG157170 Cucumis sativus L. HOM05D001499 ORTHO05D001560 1.1e-08 63.5 45 60.0
MBI04_g40275_MAGBIO Magnolia biondii HOM05D001499 ORTHO05D001560 1.1e-08 63.5 38 71.1
Hma1.2p1_0085F.1_g044330 Hydrangea macrophylla HOM05D001499 ORTHO05D001560 1.4e-08 63.2 41 63.4
SalBow5G5384 Salvia bowleyana HOM05D001499 ORTHO05D001560 1.4e-08 63.2 41 65.9
TAR625G0215 Trochodendron aralioides HOM05D001499 ORTHO05D001560 1.4e-08 63.2 38 71.1
Dinv28295 Davidia involucrata HOM05D001499 ORTHO05D001560 1.8e-08 62.8 38 71.1
Migut.N02778 Erythranthe guttata HOM05D001499 ORTHO05D001560 1.8e-08 62.8 41 63.4
Lsat_1_v5_gn_3_69141 Lactuca sativa HOM05D001499 ORTHO05D001560 1.8e-08 62.8 41 63.4
Lj4A243G59 Lonicera japonica HOM05D001499 ORTHO05D001560 1.8e-08 62.8 38 71.1
MD15G1227600 Malus domestica HOM05D001499 ORTHO05D001560 1.8e-08 62.8 47 55.3
unitig_748.g8440 Utricularia gibba HOM05D001499 ORTHO05D001560 1.8e-08 62.8 43 62.8
Ah.03g143050 Amaranthus hybridus HOM05D001499 ORTHO05D001560 2.3e-08 62.4 41 65.9
BolC7t46539H Brassica oleracea HOM05D001499 ORTHO05D001560 2.3e-08 62.4 41 68.3
ClCG10G000120 Citrullus lanatus HOM05D001499 ORTHO05D001560 2.3e-08 62.4 48 56.2
MELO3C013707.2 Cucumis melo HOM05D001499 ORTHO05D001560 2.3e-08 62.4 41 63.4
FvH4_1g09960 Fragaria vesca HOM05D001499 ORTHO05D001560 2.3e-08 62.4 43 60.5
FAN19G2215 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.3e-08 62.4 43 60.5
FAN23G1092 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.3e-08 62.4 43 60.5
FAN23G1664 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.3e-08 62.4 43 60.5
FAN26G1670 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.3e-08 62.4 43 60.5
FAN28G0276 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.3e-08 62.4 43 60.5
HanXRQChr16g0532191 Helianthus annuus HOM05D001499 ORTHO05D001560 2.3e-08 62.4 45 57.8
PGR102G1686 Punica granatum HOM05D001499 ORTHO05D001560 2.3e-08 62.4 38 71.1
Sed0013987 Sechium edule HOM05D001499 ORTHO05D001560 2.3e-08 62.4 48 58.3
Nitab4.5_0000855g0150 Nicotiana tabacum HOM05D001499 ORTHO05D001560 3.1e-08 62.0 43 65.1
Prupe.7G187600 Prunus persica HOM05D001499 ORTHO05D001560 3.1e-08 62.0 43 60.5
CDE10G0736 Ceratophyllum demersum HOM05D001499 ORTHO05D001560 4.0e-08 61.6 54 53.7
Cc07_g12230 Coffea canephora HOM05D001499 ORTHO05D001560 4.0e-08 61.6 38 68.4
LjContig00247g0007286 Lotus japonicus HOM05D001499 ORTHO05D001560 4.0e-08 61.6 41 63.4
Manes.01G157600 Manihot esculenta HOM05D001499 ORTHO05D001560 4.0e-08 61.6 47 59.6
Hund03579 Selenicereus undatus HOM05D001499 ORTHO05D001560 4.0e-08 61.6 41 65.9
A06p33980 Brassica napus HOM05D001499 ORTHO05D001560 5.2e-08 61.2 56 51.8
C03p58390 Brassica napus HOM05D001499 ORTHO05D001560 5.2e-08 61.2 56 51.8
BolC3t18097H Brassica oleracea HOM05D001499 ORTHO05D001560 5.2e-08 61.2 56 51.8
BraA06t26331Z Brassica rapa HOM05D001499 ORTHO05D001560 5.2e-08 61.2 56 51.8
CARHR243770 Cardamine hirsuta HOM05D001499 ORTHO05D001560 5.2e-08 61.2 41 68.3
QL08p051913 Quercus lobata HOM05D001499 ORTHO05D001560 5.2e-08 61.2 41 63.4
Rhsim10G0191100 Rhododendron simsii HOM05D001499 ORTHO05D001560 5.2e-08 61.2 41 63.4
RcHm_v2.0_Chr2g0096751 Rosa chinensis HOM05D001499 ORTHO05D001560 5.2e-08 61.2 38 68.4
Hund19683 Selenicereus undatus HOM05D001499 ORTHO05D001560 5.2e-08 61.2 45 60.0
Actinidia22859 Actinidia chinensis HOM05D001499 ORTHO05D001560 6.8e-08 60.8 38 71.1
BcaB03g12413 Brassica carinata HOM05D001499 ORTHO05D001560 6.8e-08 60.8 40 67.5
Cfa007113 Carpinus fangiana HOM05D001499 ORTHO05D001560 6.8e-08 60.8 38 65.8
CiPaw.08G182600 Carya illinoinensis HOM05D001499 ORTHO05D001560 6.8e-08 60.8 38 65.8
Oeu045752.1 Olea europaea HOM05D001499 ORTHO05D001560 6.8e-08 60.8 35 74.3
C07p61150 Brassica napus HOM05D001499 ORTHO05D001560 8.9e-08 60.5 35 74.3
AUR62018027 Chenopodium quinoa HOM05D001499 ORTHO05D001560 8.9e-08 60.5 44 59.1
MD02G1108200 Malus domestica HOM05D001499 ORTHO05D001560 8.9e-08 60.5 38 65.8
Oeu043406.1 Olea europaea HOM05D001499 ORTHO05D001560 8.9e-08 60.5 43 62.8
TWI81G0386 Tripterygium wilfordii HOM05D001499 ORTHO05D001560 8.9e-08 60.5 66 45.5
HPP92_017803 Vanilla planifolia HOM05D001499 ORTHO05D001560 8.9e-08 60.5 68 45.6
Aqoxy6G03023 Aquilegia oxysepala HOM05D001499 ORTHO05D001560 1.2e-07 60.1 41 63.4
MSTRG.3648 Avicennia marina HOM05D001499 ORTHO05D001560 1.2e-07 60.1 41 61.0
CANSAT25G0371 Cannabis sativa HOM05D001499 ORTHO05D001560 1.2e-07 60.1 38 68.4
QL03p001804 Quercus lobata HOM05D001499 ORTHO05D001560 1.2e-07 60.1 47 55.3
Sabra11G0130200 Salix brachista HOM05D001499 ORTHO05D001560 1.2e-07 60.1 49 59.2
Sed0015829 Sechium edule HOM05D001499 ORTHO05D001560 1.2e-07 60.1 48 58.3
Sc06g0005610 Simmondsia chinensis HOM05D001499 ORTHO05D001560 1.2e-07 60.1 41 61.0
A03p63560 Brassica napus HOM05D001499 ORTHO05D001560 1.5e-07 59.7 41 65.9
BraA03t15426Z Brassica rapa HOM05D001499 ORTHO05D001560 1.5e-07 59.7 41 65.9
Potri.001G456800 Populus trichocarpa HOM05D001499 ORTHO05D001560 1.5e-07 59.7 49 59.2
Sabra16G0309100 Salix brachista HOM05D001499 ORTHO05D001560 1.5e-07 59.7 49 59.2
SGA_v2.0_scaffold132G34578 Striga asiatica HOM05D001499 ORTHO05D001560 1.5e-07 59.7 41 58.5
AL7G15710 Arabidopsis lyrata HOM05D001499 ORTHO05D001560 2.0e-07 59.3 41 65.9
AT4G35460 Arabidopsis thaliana HOM05D001499 ORTHO05D001560 2.0e-07 59.3 41 65.9
BraA09t36774Z Brassica rapa HOM05D001499 ORTHO05D001560 2.0e-07 59.3 45 60.0
DCAR_016698 Daucus carota HOM05D001499 ORTHO05D001560 2.0e-07 59.3 42 64.3
Lalb_Chr05g0229491 Lupinus albus HOM05D001499 ORTHO05D001560 2.0e-07 59.3 32 81.2
Nitab4.5_0004448g0020 Nicotiana tabacum HOM05D001499 ORTHO05D001560 2.0e-07 59.3 43 62.8
Sp7g33230 Schrenkiella parvula HOM05D001499 ORTHO05D001560 2.0e-07 59.3 41 65.9
THA.LOC104819705 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 2.0e-07 59.3 42 64.3
TAR381G1024 Trochodendron aralioides HOM05D001499 ORTHO05D001560 2.0e-07 59.3 46 60.9
Atru.chr3.60 Acer truncatum HOM05D001499 ORTHO05D001560 2.6e-07 58.9 53 52.8
MSTRG.15604 Avicennia marina HOM05D001499 ORTHO05D001560 2.6e-07 58.9 35 65.7
AUR62003716 Chenopodium quinoa HOM05D001499 ORTHO05D001560 2.6e-07 58.9 36 69.4
Haze_03643 Corylus avellana HOM05D001499 ORTHO05D001560 2.6e-07 58.9 38 65.8
Eucgr.J02565 Eucalyptus grandis HOM05D001499 ORTHO05D001560 2.6e-07 58.9 41 61.0
Solyc02g082250.4 Solanum lycopersicum HOM05D001499 ORTHO05D001560 2.6e-07 58.9 38 68.4
Sopen02g026910 Solanum pennellii HOM05D001499 ORTHO05D001560 2.6e-07 58.9 38 68.4
PGSC0003DMG400013638 Solanum tuberosum HOM05D001499 ORTHO05D001560 2.6e-07 58.9 38 68.4
BcaB07g31731 Brassica carinata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
BcaB08g34733 Brassica carinata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
BcaC01g02918 Brassica carinata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
BcaC04g22975 Brassica carinata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
BcaC04g22976 Brassica carinata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
BcaNung02392 Brassica carinata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
A09p11350 Brassica napus HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
C09p13370 Brassica napus HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
C09p13380 Brassica napus HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
BolC9t54228H Brassica oleracea HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
BraA09t36773Z Brassica rapa HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
CARHR107590 Cardamine hirsuta HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
Eucgr.J02562 Eucalyptus grandis HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
QL03p001372 Quercus lobata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 38 65.8
QL03p002480 Quercus lobata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 38 65.8
QL03p002661 Quercus lobata HOM05D001499 ORTHO05D001560 3.4e-07 58.5 38 65.8
SHI29477 Sapria himalayana HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
Sp3g30750 Schrenkiella parvula HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 71.4
HPP92_015475 Vanilla planifolia HOM05D001499 ORTHO05D001560 3.4e-07 58.5 35 68.6
BcaNung06459 Brassica carinata HOM05D001499 ORTHO05D001560 4.4e-07 58.2 35 71.4
C03p80680 Brassica napus HOM05D001499 ORTHO05D001560 4.4e-07 58.2 40 65.0
BolC3t20311H Brassica oleracea HOM05D001499 ORTHO05D001560 4.4e-07 58.2 40 65.0
ClCG01G020990 Citrullus lanatus HOM05D001499 ORTHO05D001560 4.4e-07 58.2 48 56.2
MELO3C007984.2 Cucumis melo HOM05D001499 ORTHO05D001560 4.4e-07 58.2 48 56.2
CsaV3_6G047950 Cucumis sativus L. HOM05D001499 ORTHO05D001560 4.4e-07 58.2 48 56.2
Thhalv10022728m.g Eutrema salsugineum HOM05D001499 ORTHO05D001560 4.4e-07 58.2 35 71.4
Lj2g0020776 Lotus japonicus HOM05D001499 ORTHO05D001560 4.4e-07 58.2 41 58.5
Medtr5g024900 Medicago truncatula HOM05D001499 ORTHO05D001560 4.4e-07 58.2 34 70.6
PSO541G0943 Papaver somniferum HOM05D001499 ORTHO05D001560 4.4e-07 58.2 92 43.5
AagrBONN_evm.TU.Sc2ySwM_117.3542 Anthoceros agrestis HOM05D001499 ORTHO05D001560 5.8e-07 57.8 35 68.6
AT2G17420 Arabidopsis thaliana HOM05D001499 ORTHO05D001560 5.8e-07 57.8 37 64.9
arahy.Tifrunner.gnm1.ann1.3S17EH Arachis hypogaea HOM05D001499 ORTHO05D001560 5.8e-07 57.8 34 70.6
arahy.Tifrunner.gnm1.ann1.PYJ41C Arachis hypogaea HOM05D001499 ORTHO05D001560 5.8e-07 57.8 34 70.6
A09p11360 Brassica napus HOM05D001499 ORTHO05D001560 5.8e-07 57.8 35 71.4
PSO675G3275 Papaver somniferum HOM05D001499 ORTHO05D001560 5.8e-07 57.8 92 42.4
Sed0003918 Sechium edule HOM05D001499 ORTHO05D001560 5.8e-07 57.8 44 59.1
Sc08g0002010 Simmondsia chinensis HOM05D001499 ORTHO05D001560 5.8e-07 57.8 37 64.9
Aa31LG8G14730 Aethionema arabicum HOM05D001499 ORTHO05D001560 7.5e-07 57.4 35 68.6
AL3G50290 Arabidopsis lyrata HOM05D001499 ORTHO05D001560 7.5e-07 57.4 35 68.6
Carub.0007s0487 Capsella rubella HOM05D001499 ORTHO05D001560 7.5e-07 57.4 35 71.4
Ca_22440_v3 Cicer arietinum L. HOM05D001499 ORTHO05D001560 7.5e-07 57.4 36 66.7
A08p21860 Brassica napus HOM05D001499 ORTHO05D001560 9.8e-07 57.0 40 62.5
BraA08t34139Z Brassica rapa HOM05D001499 ORTHO05D001560 9.8e-07 57.0 40 62.5
Thhalv10025459m.g Eutrema salsugineum HOM05D001499 ORTHO05D001560 9.8e-07 57.0 41 61.0
Glyma.16G113100 Glycine max HOM05D001499 ORTHO05D001560 9.8e-07 57.0 36 63.9
Nitab4.5_0000304g0020 Nicotiana tabacum HOM05D001499 ORTHO05D001560 9.8e-07 57.0 35 71.4
Nitab4.5_0009782g0010 Nicotiana tabacum HOM05D001499 ORTHO05D001560 9.8e-07 57.0 35 71.4
Peaxi162Scf00861g00323 Petunia axillaris HOM05D001499 ORTHO05D001560 9.8e-07 57.0 32 78.1
Phvul.003G271900 Phaseolus vulgaris HOM05D001499 ORTHO05D001560 9.8e-07 57.0 36 63.9
Potri.011G145100 Populus trichocarpa HOM05D001499 ORTHO05D001560 9.8e-07 57.0 35 68.6
THA.LOC104821362 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 9.8e-07 57.0 35 68.6
VMungo0251G3243 Vigna mungo HOM05D001499 ORTHO05D001560 9.8e-07 57.0 36 63.9
Zm00001eb201870 Zea mays HOM05D001499 ORTHO05D001560 9.8e-07 57.0 33 69.7
Zm00001eb252570 Zea mays HOM05D001499 ORTHO05D001560 9.8e-07 57.0 33 72.7
CDE10G0449 Ceratophyllum demersum HOM05D001499 ORTHO05D001560 1.3e-06 56.6 35 68.6
Gohir.D11G030500 Gossypium hirsutum HOM05D001499 ORTHO05D001560 1.3e-06 56.6 47 57.4
Gorai.007G033400 Gossypium raimondii HOM05D001499 ORTHO05D001560 1.3e-06 56.6 47 57.4
QL03p002238 Quercus lobata HOM05D001499 ORTHO05D001560 1.3e-06 56.6 33 72.7
BcaC01g00496 Brassica carinata HOM05D001499 ORTHO05D001560 1.7e-06 56.2 35 68.6
Carub.0003s3146 Capsella rubella HOM05D001499 ORTHO05D001560 1.7e-06 56.2 34 70.6
Ca_25019_v3 Cicer arietinum L. HOM05D001499 ORTHO05D001560 1.7e-06 56.2 41 53.7
Gohir.A11G031800 Gossypium hirsutum HOM05D001499 ORTHO05D001560 1.7e-06 56.2 45 60.0
Mapoly0009s0130 Marchantia polymorpha HOM05D001499 ORTHO05D001560 1.7e-06 56.2 41 61.0
Zm00001eb281340 Zea mays HOM05D001499 ORTHO05D001560 1.7e-06 56.2 33 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1966 Anthoceros agrestis HOM05D001499 ORTHO05D001560 2.2e-06 55.8 35 62.9
Duzib147G0563 Durio zibethinus HOM05D001499 ORTHO05D001560 2.2e-06 55.8 33 69.7
Duzib268G0662 Durio zibethinus HOM05D001499 ORTHO05D001560 2.2e-06 55.8 33 69.7
MD02G1108300 Malus domestica HOM05D001499 ORTHO05D001560 2.2e-06 55.8 37 64.9
Solyc03g032000.4 Solanum lycopersicum HOM05D001499 ORTHO05D001560 2.2e-06 55.8 32 75.0
Sopen03g005850 Solanum pennellii HOM05D001499 ORTHO05D001560 2.2e-06 55.8 32 75.0
PGSC0003DMG400018665 Solanum tuberosum HOM05D001499 ORTHO05D001560 2.2e-06 55.8 32 75.0
Lalb_Chr16g0380211 Lupinus albus HOM05D001499 ORTHO05D001560 2.9e-06 55.5 35 62.9
Os02g0713400 Oryza sativa ssp. japonica HOM05D001499 ORTHO05D001560 2.9e-06 55.5 33 66.7
Psat2g147440 Pisum sativum HOM05D001499 ORTHO05D001560 2.9e-06 55.5 41 53.7
THA.LOC104804299 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 2.9e-06 55.5 38 63.2
ATR0605G033 Amborella trichopoda HOM05D001499 ORTHO05D001560 3.7e-06 55.1 35 62.9
Glyma.01G156600 Glycine max HOM05D001499 ORTHO05D001560 3.7e-06 55.1 32 71.9
Lalb_Chr09g0324861 Lupinus albus HOM05D001499 ORTHO05D001560 3.7e-06 55.1 35 62.9
Phvul.002G119000 Phaseolus vulgaris HOM05D001499 ORTHO05D001560 3.7e-06 55.1 32 71.9
VMungo1215G0295 Vigna mungo HOM05D001499 ORTHO05D001560 4.9e-06 54.7 32 68.8
COL.COLO4_22509 Corchorus olitorius HOM05D001499 ORTHO05D001560 6.4e-06 54.3 33 66.7
Thecc.01G090700 Theobroma cacao HOM05D001499 ORTHO05D001560 6.4e-06 54.3 33 66.7
Cre07.g355600 Chlamydomonas reinhardtii HOM05D001499 ORTHO05D001560 8.3e-06 53.9 35 62.9
Glyma.11G088200 Glycine max HOM05D001499 ORTHO05D001560 8.3e-06 53.9 32 68.8


User provided reference genes

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