Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.6e-291 1005.4 513 100.0
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 3.0e-221 771.9 571 73.0
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 1.3e-219 766.5 567 72.3
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 4.8e-219 764.6 542 74.0
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 2.6e-217 758.8 572 69.9
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 5.9e-217 757.7 567 71.6
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 1.7e-216 756.1 560 72.0
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 6.5e-216 754.2 566 70.8
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 8.5e-216 753.8 565 70.3
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.9e-215 752.7 559 72.3
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 5.5e-215 751.1 558 71.1
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 9.4e-215 750.4 566 70.1
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 2.1e-214 749.2 558 71.0
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 2.1e-214 749.2 563 71.2
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 3.6e-214 748.4 565 70.1
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 4.7e-214 748.0 559 71.9
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 1.0e-213 746.9 562 70.8
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 1.8e-213 746.1 559 70.1
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.8e-213 746.1 559 71.2
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 8.8e-213 743.8 566 70.0
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 8.8e-213 743.8 563 71.6
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 8.8e-213 743.8 570 69.6
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 8.8e-213 743.8 558 70.3
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 8.8e-213 743.8 570 69.6
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 8.8e-213 743.8 565 69.9
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.1e-212 743.4 558 70.1
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 3.3e-212 741.9 560 70.4
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 7.4e-212 740.7 570 70.2
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 9.7e-212 740.3 556 70.7
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.3e-211 740.0 556 70.7
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 1.7e-211 739.6 567 69.0
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 2.2e-211 739.2 560 70.2
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 2.8e-211 738.8 565 69.6
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 2.8e-211 738.8 574 69.3
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 3.7e-211 738.4 558 70.6
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 3.7e-211 738.4 559 71.0
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 3.7e-211 738.4 565 68.7
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 1.1e-210 736.9 559 70.1
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 1.4e-210 736.5 565 69.0
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 1.8e-210 736.1 564 70.2
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 1.8e-210 736.1 566 69.3
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 2.4e-210 735.7 558 70.8
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 3.1e-210 735.3 558 69.7
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 7.0e-210 734.2 563 69.4
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 7.0e-210 734.2 571 70.2
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 7.0e-210 734.2 564 69.3
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 9.1e-210 733.8 563 70.0
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 1.5e-209 733.0 559 69.6
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.5e-209 733.0 558 70.8
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 3.5e-209 731.9 566 70.3
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.0e-208 730.3 561 69.9
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.3e-208 729.9 558 70.6
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 1.7e-208 729.6 558 69.4
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 1.7e-208 729.6 633 63.7
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 2.2e-208 729.2 564 69.0
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 2.2e-208 729.2 596 66.1
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 2.9e-208 728.8 562 68.5
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 3.8e-208 728.4 561 69.5
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 6.5e-208 727.6 561 69.5
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 8.5e-208 727.2 562 69.9
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 1.1e-207 726.9 560 69.3
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.1e-207 726.9 559 69.6
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 1.1e-207 726.9 597 66.5
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 1.5e-207 726.5 566 68.7
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 1.5e-207 726.5 562 68.7
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 1.5e-207 726.5 573 67.5
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 1.5e-207 726.5 565 69.9
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 2.5e-207 725.7 558 70.1
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 3.2e-207 725.3 573 67.4
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 3.2e-207 725.3 562 68.5
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 4.2e-207 724.9 563 69.6
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 5.5e-207 724.5 572 68.2
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 7.2e-207 724.2 559 69.1
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 9.4e-207 723.8 562 69.9
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 9.4e-207 723.8 559 69.1
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 1.2e-206 723.4 559 69.6
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.2e-206 723.4 562 69.0
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.1e-206 722.6 561 68.8
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 2.1e-206 722.6 560 68.8
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.1e-206 722.6 567 68.6
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 3.6e-206 721.8 595 65.2
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 4.7e-206 721.5 560 68.4
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 6.1e-206 721.1 566 68.2
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 1.8e-205 719.5 584 66.8
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 3.0e-205 718.8 559 68.5
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 3.0e-205 718.8 557 69.5
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 5.2e-205 718.0 559 68.5
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 6.7e-205 717.6 559 68.5
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 6.7e-205 717.6 559 68.5
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 6.7e-205 717.6 566 67.5
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 8.8e-205 717.2 557 69.5
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 8.8e-205 717.2 557 69.5
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 8.8e-205 717.2 568 67.6
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 1.1e-204 716.8 559 68.7
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 1.1e-204 716.8 638 62.5
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 2.0e-204 716.1 560 68.4
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 2.0e-204 716.1 559 68.2
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 3.3e-204 715.3 566 67.5
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 4.4e-204 714.9 557 69.3
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 5.7e-204 714.5 559 68.0
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 7.4e-204 714.1 613 65.1
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 7.4e-204 714.1 558 68.1
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.2e-203 712.6 557 68.9
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 2.2e-203 712.6 568 67.3
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 4.8e-203 711.4 560 68.0
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 4.8e-203 711.4 592 65.2
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 6.3e-203 711.1 560 68.0
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 6.3e-203 711.1 571 66.7
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 8.2e-203 710.7 565 66.9
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 1.8e-202 709.5 559 68.0
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 3.1e-202 708.8 565 67.1
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 4.1e-202 708.4 540 70.2
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 3.5e-201 705.3 560 67.5
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 4.5e-201 704.9 558 67.0
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 5.9e-201 704.5 567 66.3
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 1.0e-200 703.7 572 65.9
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 1.1e-199 700.3 573 66.8
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 2.5e-199 699.1 566 65.9
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 6.1e-198 694.5 564 66.0
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 8.8e-197 690.6 565 66.5
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 1.5e-196 689.9 573 64.6
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 1.2e-193 680.2 678 57.7
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.6e-193 679.9 538 68.6
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 2.7e-193 679.1 574 63.9
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 4.4e-188 661.8 580 62.4
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 9.1e-186 654.1 575 62.6
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.2e-182 643.7 492 70.5
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 2.2e-179 632.9 494 69.4
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 5.9e-177 624.8 569 61.5
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 5.4e-170 601.7 532 62.6
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 9.2e-170 600.9 513 64.7
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 2.2e-155 553.1 454 67.2
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 5.4e-146 521.9 349 78.2
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 6.6e-144 515.0 584 49.0
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 9.6e-135 484.6 434 60.6
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.8e-134 483.0 477 60.2
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.4e-130 470.7 517 54.5
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 9.3e-130 468.0 575 46.4
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.2e-129 467.6 434 60.8
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.2e-129 467.6 431 61.5
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 1.1e-127 461.1 591 47.4
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.9e-127 460.3 348 72.1
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 6.5e-123 445.3 516 52.3
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 4.6e-113 412.5 292 73.6
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 3.9e-112 409.5 272 76.8
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 1.1e-111 407.9 415 56.4
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 4.5e-108 396.0 590 40.3
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 7.7e-100 368.6 221 85.5
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.7e-94 350.9 221 83.3
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 2.8e-94 350.1 277 69.7
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.1e-93 348.2 221 82.8
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 3.1e-93 346.7 228 79.8
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 4.8e-86 322.8 527 42.7
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 5.0e-83 312.8 193 79.8
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.2e-82 310.1 221 75.6
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.5e-71 274.6 193 74.1
AagrBONN_evm.TU.Sc2ySwM_340.50 Anthoceros agrestis HOM05D003693 ORTHO05D004698 7.3e-58 229.2 326 46.0
MD04G1173900 Malus domestica HOM05D003693 ORTHO05D021141 1.8e-56 224.6 155 71.6
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 2.9e-46 190.7 201 53.7
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.9e-43 180.3 215 50.7
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.2e-41 175.3 164 59.1
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 6.4e-30 136.3 84 77.4
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 4.6e-28 130.2 74 89.2
Nitab4.5_0001676g0090 Nicotiana tabacum HOM05D003693 ORTHO05D021141 7.8e-28 129.4 83 72.3
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 6.9e-24 116.3 70 85.7
Actinidia23248 Actinidia chinensis HOM05D003693 ORTHO05D021141 1.5e-23 115.2 75 78.7
Os11g0133700 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 2.6e-23 114.4 88 65.9
Os12g0131150 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 2.6e-23 114.4 88 65.9
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 1.9e-21 108.2 90 63.3
Peaxi162Scf00071g01042 Petunia axillaris HOM05D003693 ORTHO05D021141 6.0e-20 103.2 75 72.0
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 1.1e-18 99.0 72 66.7
RcHm_v2.0_Chr4g0412421 Rosa chinensis HOM05D003693 ORTHO05D004698 5.8e-15 86.7 147 37.4
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.1e-10 72.4 56 67.9
EL10Ac2g04375 Beta vulgaris HOM05D003693 ORTHO05D021141 3.7e-09 67.4 42 69.0
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 9.0e-08 62.8 47 61.7
EL10As4g23424 Beta vulgaris HOM05D003693 ORTHO05D088905 7.6e-07 59.7 51 64.7
Aqoxy7G03423 Aquilegia oxysepala HOM05D000586 ORTHO05D003356 6.5e-06 56.6 135 32.6


User provided reference genes

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