Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 6.6e-44 180.3 88 100.0
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.4e-14 82.8 70 57.1
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.4e-14 82.8 70 57.1
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.9e-14 82.4 69 55.1
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.2e-14 81.3 41 95.1
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 7.2e-14 80.5 70 52.9
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 9.4e-14 80.1 72 50.0
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.2e-13 79.7 66 56.1
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.1e-13 79.0 74 50.0
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 2.1e-13 79.0 68 54.4
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 2.7e-13 78.6 70 50.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 3.6e-13 78.2 77 49.4
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 3.6e-13 78.2 73 47.9
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 3.6e-13 78.2 68 54.4
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 4.6e-13 77.8 69 52.2
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 4.6e-13 77.8 66 53.0
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 6.1e-13 77.4 66 54.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 6.1e-13 77.4 65 55.4
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.4e-12 76.3 71 49.3
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.4e-12 76.3 70 48.6
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.8e-12 75.9 64 54.7
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.8e-12 75.9 57 59.6
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 2.3e-12 75.5 75 48.0
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 2.3e-12 75.5 67 52.2
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.0e-12 75.1 64 54.7
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 3.0e-12 75.1 72 48.6
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 3.0e-12 75.1 70 47.1
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 3.9e-12 74.7 70 51.4
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 3.9e-12 74.7 70 48.6
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.9e-12 74.7 70 48.6
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 3.9e-12 74.7 64 53.1
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 3.9e-12 74.7 64 54.7
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 5.1e-12 74.3 64 51.6
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 5.1e-12 74.3 67 49.3
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 6.7e-12 73.9 75 45.3
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 6.7e-12 73.9 64 54.7
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 6.7e-12 73.9 69 50.7
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 8.8e-12 73.6 61 52.5
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 8.8e-12 73.6 75 45.3
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 8.8e-12 73.6 64 51.6
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 8.8e-12 73.6 79 45.6
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 8.8e-12 73.6 61 54.1
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.8e-12 73.6 70 47.1
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.1e-11 73.2 64 54.7
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.1e-11 73.2 70 47.1
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.1e-11 73.2 77 44.2
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 1.5e-11 72.8 70 45.7
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 2.0e-11 72.4 60 53.3
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 2.0e-11 72.4 64 51.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 2.5e-11 72.0 82 46.3
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.5e-11 72.0 64 50.0
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 2.5e-11 72.0 78 43.6
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 2.5e-11 72.0 73 46.6
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.3e-11 71.6 64 51.6
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 3.3e-11 71.6 71 46.5
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 3.3e-11 71.6 64 50.0
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.3e-11 71.6 75 46.7
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 4.3e-11 71.2 64 46.9
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 4.3e-11 71.2 71 46.5
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 4.3e-11 71.2 71 46.5
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 4.3e-11 71.2 71 46.5
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 4.3e-11 71.2 79 46.8
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 4.3e-11 71.2 64 51.6
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 5.7e-11 70.9 71 46.5
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.7e-11 70.9 64 53.1
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 5.7e-11 70.9 71 45.1
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 5.7e-11 70.9 75 42.7
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 7.4e-11 70.5 64 50.0
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 7.4e-11 70.5 64 50.0
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 7.4e-11 70.5 64 50.0
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 7.4e-11 70.5 64 50.0
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 7.4e-11 70.5 70 48.6
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 9.7e-11 70.1 71 45.1
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 9.7e-11 70.1 73 45.2
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 9.7e-11 70.1 61 52.5
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 1.3e-10 69.7 58 50.0
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.7e-10 69.3 70 51.4
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.7e-10 69.3 71 46.5
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.7e-10 69.3 71 46.5
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.7e-10 69.3 63 50.8
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 2.2e-10 68.9 64 50.0
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.2e-10 68.9 71 45.1
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 2.2e-10 68.9 64 51.6
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 2.8e-10 68.6 79 44.3
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 2.8e-10 68.6 74 45.9
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.8e-10 68.6 75 44.0
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.8e-10 68.6 70 50.0
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.8e-10 68.6 65 47.7
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 3.7e-10 68.2 70 50.0
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.7e-10 68.2 70 50.0
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 4.8e-10 67.8 56 53.6
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 4.8e-10 67.8 71 47.9
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 4.8e-10 67.8 64 48.4
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 8.2e-10 67.0 56 48.2
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 8.2e-10 67.0 67 44.8
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.1e-09 66.6 67 44.8
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.1e-09 66.6 64 48.4
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-09 66.6 64 48.4
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.1e-09 66.6 62 48.4
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.4e-09 66.2 57 45.6
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.8e-09 65.9 73 45.2
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.8e-09 65.9 73 45.2
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 3.1e-09 65.1 63 50.8
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 9.1e-09 63.5 70 41.4
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 1.0e-07 60.1 67 41.8
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 5.0e-07 57.8 70 38.6
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 9.4e-06 53.5 51 47.1


User provided reference genes

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