Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 5.1e-91 337.8 182 100.0
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.4e-72 276.6 180 80.6
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 7.0e-72 274.2 179 80.4
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 9.1e-72 273.9 180 79.4
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.6e-71 273.1 179 80.4
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.6e-71 273.1 179 80.4
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 1.6e-71 273.1 185 78.9
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 4.5e-71 271.6 179 79.9
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 1.3e-70 270.0 179 79.9
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.3e-70 270.0 180 79.4
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.2e-70 269.2 178 78.7
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.9e-70 268.9 179 79.3
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 3.8e-70 268.5 180 78.9
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 3.8e-70 268.5 180 78.9
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 3.8e-70 268.5 179 78.8
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 5.0e-70 268.1 178 78.7
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.0e-70 268.1 179 79.3
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.0e-70 268.1 179 79.3
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 5.0e-70 268.1 182 79.1
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 6.5e-70 267.7 187 75.4
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 6.5e-70 267.7 180 76.7
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 8.5e-70 267.3 180 77.8
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 8.5e-70 267.3 178 78.7
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 8.5e-70 267.3 182 78.0
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.1e-69 266.9 181 78.5
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 1.1e-69 266.9 181 77.9
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.5e-69 266.5 180 78.9
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.5e-69 266.5 180 78.9
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 1.5e-69 266.5 183 78.7
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.5e-69 266.5 179 78.2
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.5e-69 266.5 164 82.9
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.9e-69 266.2 180 78.9
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.9e-69 266.2 182 79.1
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.9e-69 266.2 182 79.1
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 2.5e-69 265.8 182 78.0
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 2.5e-69 265.8 181 79.0
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 2.5e-69 265.8 182 76.4
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.5e-69 265.8 179 79.3
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.2e-69 265.4 179 77.7
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 3.2e-69 265.4 180 78.9
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 4.2e-69 265.0 180 77.2
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 4.2e-69 265.0 180 78.3
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 4.2e-69 265.0 178 77.5
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 4.2e-69 265.0 183 76.5
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.2e-69 265.0 180 77.8
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 4.2e-69 265.0 181 78.5
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 4.2e-69 265.0 180 75.6
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 5.5e-69 264.6 182 78.6
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 5.5e-69 264.6 179 78.2
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.5e-69 264.6 182 78.6
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 5.5e-69 264.6 183 77.0
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 5.5e-69 264.6 179 78.8
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 5.5e-69 264.6 183 77.6
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 7.2e-69 264.2 182 75.8
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 7.2e-69 264.2 182 75.8
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 9.4e-69 263.8 180 78.3
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.2e-68 263.5 179 77.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.6e-68 263.1 167 83.8
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.6e-68 263.1 181 75.7
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 1.6e-68 263.1 179 77.7
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.6e-68 263.1 179 77.7
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 2.1e-68 262.7 179 77.7
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 2.1e-68 262.7 185 74.6
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 2.7e-68 262.3 180 77.8
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 2.7e-68 262.3 185 75.1
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.7e-68 262.3 183 77.6
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 2.7e-68 262.3 186 75.8
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 2.7e-68 262.3 180 77.2
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 3.6e-68 261.9 182 78.6
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 3.6e-68 261.9 180 76.7
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.6e-68 261.9 176 78.4
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 3.6e-68 261.9 188 75.0
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 4.7e-68 261.5 180 77.8
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 6.1e-68 261.2 179 77.1
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 6.1e-68 261.2 184 76.6
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 6.1e-68 261.2 179 77.7
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 8.0e-68 260.8 180 75.6
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 8.0e-68 260.8 182 75.8
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 8.0e-68 260.8 178 77.5
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 8.0e-68 260.8 178 77.5
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 8.0e-68 260.8 179 77.1
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.0e-67 260.4 183 76.5
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.0e-67 260.4 180 76.7
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.0e-67 260.4 180 76.7
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.0e-67 260.4 180 76.7
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 1.0e-67 260.4 182 77.5
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.0e-67 260.4 180 76.1
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.0e-67 260.4 182 76.4
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.0e-67 260.4 181 76.8
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.0e-67 260.4 185 75.1
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.4e-67 260.0 180 76.1
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.4e-67 260.0 183 75.4
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.8e-67 259.6 182 78.0
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 1.8e-67 259.6 184 75.0
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 2.3e-67 259.2 183 74.9
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 2.3e-67 259.2 183 74.9
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 2.3e-67 259.2 180 77.8
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.3e-67 259.2 179 76.0
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 3.0e-67 258.8 180 76.7
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 4.0e-67 258.5 180 75.6
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 5.2e-67 258.1 180 74.4
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 5.2e-67 258.1 183 74.9
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 8.8e-67 257.3 183 74.9
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.2e-66 256.9 183 74.9
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.0e-66 256.1 179 73.7
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 4.4e-66 255.0 183 74.9
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 5.7e-66 254.6 175 78.9
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 9.8e-66 253.8 185 73.0
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.3e-65 253.4 183 74.9
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.7e-65 253.1 187 73.3
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.7e-65 253.1 184 74.5
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 2.8e-65 252.3 173 78.6
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.7e-65 251.9 209 68.9
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.4e-64 250.0 164 80.5
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.4e-64 250.0 181 72.4
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 4.1e-64 248.4 182 74.2
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.7e-63 245.7 181 72.4
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 3.5e-63 245.4 161 80.7
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.2e-60 236.9 159 78.6
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.7e-60 235.0 180 67.8
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.3e-59 232.6 178 68.0
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.7e-57 226.5 147 82.3
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 2.0e-55 219.5 165 73.9
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.7e-55 219.2 188 66.5
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.6e-52 209.9 174 68.4
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 2.9e-49 199.1 124 84.7
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 5.0e-46 188.3 163 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-45 186.0 141 71.6
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.7e-41 173.3 116 81.9
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 8.3e-41 171.0 112 83.0
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 8.3e-41 171.0 112 81.2
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 1.4e-40 170.2 114 82.5
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 7.1e-40 167.9 112 79.5
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.7e-39 166.0 104 82.7
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.3e-38 162.9 109 83.5
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 8.6e-38 161.0 104 82.7
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 2.0e-34 149.8 122 66.4
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.3e-29 132.1 87 85.1
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.4e-24 115.2 81 75.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 3.1e-19 99.4 79 67.1
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 1.6e-15 87.0 63 65.1
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.9e-14 82.4 63 68.3
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 7.6e-10 68.2 171 34.5


User provided reference genes

Program Settings