Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 4.0e-182 641.3 335 100.0
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 2.8e-95 352.8 383 51.4
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 9.2e-94 347.8 363 52.6
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 2.7e-93 346.3 373 52.5
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 5.9e-93 345.1 353 55.2
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.3e-92 344.0 388 52.6
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 3.8e-92 342.4 365 51.2
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.5e-91 340.5 360 54.2
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 1.9e-91 340.1 357 53.5
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.3e-91 339.3 346 55.2
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 1.6e-90 337.0 376 52.1
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.6e-90 337.0 407 50.6
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.1e-90 336.7 366 53.0
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.1e-90 336.7 361 52.6
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 8.0e-90 334.7 366 52.5
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 1.0e-89 334.3 375 51.2
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 1.4e-89 334.0 380 49.7
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.8e-89 333.6 344 54.7
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.3e-89 333.2 331 56.2
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 4.0e-89 332.4 363 52.3
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 4.0e-89 332.4 367 52.6
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 4.0e-89 332.4 367 51.0
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 4.0e-89 332.4 374 51.6
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 5.2e-89 332.0 374 50.3
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 5.2e-89 332.0 374 50.8
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 6.8e-89 331.6 371 50.9
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 8.9e-89 331.3 330 55.2
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.2e-88 330.9 374 50.3
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 2.0e-88 330.1 369 51.2
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 2.6e-88 329.7 378 51.6
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.6e-88 329.7 370 51.6
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 3.4e-88 329.3 370 51.4
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 4.4e-88 328.9 371 49.1
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 4.4e-88 328.9 379 50.4
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 4.4e-88 328.9 376 50.3
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.7e-88 328.6 381 49.9
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.7e-87 327.0 366 50.8
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 2.9e-87 326.2 377 49.3
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 3.7e-87 325.9 375 50.1
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 3.7e-87 325.9 363 52.1
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 8.3e-87 324.7 369 51.8
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.1e-86 324.3 382 49.0
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 1.4e-86 323.9 363 50.7
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.8e-86 323.6 374 51.1
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.8e-86 323.6 377 50.1
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.8e-86 323.6 377 50.4
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 1.8e-86 323.6 391 47.8
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.8e-86 323.6 366 50.0
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 3.2e-86 322.8 360 50.8
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 3.2e-86 322.8 360 50.8
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 4.1e-86 322.4 358 50.3
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.2e-85 320.9 362 51.4
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.6e-85 320.5 364 50.5
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 2.0e-85 320.1 362 49.4
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 2.7e-85 319.7 385 48.6
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 2.7e-85 319.7 386 49.0
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 4.6e-85 318.9 355 51.0
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 7.8e-85 318.2 376 49.7
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.0e-84 317.8 363 51.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.0e-84 317.8 361 49.9
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.0e-84 317.8 358 51.1
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.3e-84 317.4 364 48.6
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.3e-84 317.4 357 51.5
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.7e-84 317.0 342 51.5
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.3e-84 316.6 354 51.7
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 3.0e-84 316.2 379 48.3
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 3.0e-84 316.2 418 45.7
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 3.9e-84 315.8 367 46.9
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 3.9e-84 315.8 343 50.1
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 5.0e-84 315.5 339 51.9
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 6.6e-84 315.1 375 49.1
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 6.6e-84 315.1 381 49.6
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 8.6e-84 314.7 355 49.6
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 8.6e-84 314.7 427 43.6
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.9e-83 313.5 437 45.3
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 2.5e-83 313.2 351 49.9
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 4.3e-83 312.4 358 49.7
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 9.5e-83 311.2 349 50.1
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 2.1e-82 310.1 411 45.7
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 6.2e-82 308.5 358 51.1
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 8.0e-82 308.1 371 48.8
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 8.0e-82 308.1 388 45.9
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.1e-81 307.8 372 49.2
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 1.1e-81 307.8 363 50.1
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.8e-81 307.0 338 51.2
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.8e-81 307.0 446 43.0
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 8.9e-81 304.7 363 48.5
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 8.9e-81 304.7 307 53.4
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 2.0e-80 303.5 357 50.7
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 4.4e-80 302.4 384 46.4
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 2.2e-79 300.1 355 49.9
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 4.9e-79 298.9 397 44.8
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 8.3e-79 298.1 336 50.0
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 7.8e-77 291.6 333 49.5
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 3.0e-76 289.7 366 48.1
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.6e-74 283.9 445 40.2
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 2.1e-74 283.5 347 48.4
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 5.8e-72 275.4 404 42.8
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 4.9e-71 272.3 207 66.2
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 2.4e-70 270.0 410 41.2
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 3.2e-70 269.6 325 47.4
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 5.4e-70 268.9 315 48.9
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 1.5e-67 260.8 312 46.5
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 5.4e-62 242.3 330 45.2
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 7.8e-61 238.4 162 67.3
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 5.2e-57 225.7 141 76.6
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.1e-54 218.0 308 39.6
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.6e-50 204.1 365 36.2
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 8.1e-50 201.8 135 69.6
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.5e-48 197.6 313 38.3
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 4.9e-47 192.6 290 41.4
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 7.9e-45 185.3 315 36.5
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 7.1e-38 162.2 111 68.5
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 6.2e-34 149.1 217 42.9
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 1.3e-28 131.3 228 33.3
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 2.9e-23 113.6 178 36.0
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 4.2e-22 109.8 69 72.5
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 4.2e-22 109.8 181 45.9
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 3.0e-20 103.6 186 32.8
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.7e-18 97.8 85 58.8
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 4.8e-18 96.3 56 78.6
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 8.2e-18 95.5 231 29.9
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 6.5e-15 85.9 62 66.1
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 2.7e-13 80.5 75 52.0
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 3.7e-10 70.1 99 45.5


User provided reference genes

Program Settings