Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 5.2e-142 507.7 253 100.0
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 6.4e-124 447.6 253 88.9
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-86 323.9 251 63.3
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 6.5e-84 314.7 250 63.6
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.9e-83 313.2 248 64.1
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 2.5e-83 312.8 251 62.2
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 2.5e-83 312.8 251 61.8
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.2e-83 311.2 251 62.9
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 2.7e-82 309.3 212 72.2
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.6e-82 308.9 249 63.1
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 4.6e-82 308.5 251 61.0
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 4.6e-82 308.5 258 60.9
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 7.9e-82 307.8 252 61.9
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.4e-81 307.0 253 62.1
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 2.3e-81 306.2 251 59.4
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 3.9e-81 305.4 248 62.5
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 6.7e-81 304.7 250 63.6
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 8.8e-81 304.3 253 62.1
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-80 303.9 251 60.6
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.1e-80 303.9 251 60.6
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.1e-80 303.9 188 73.9
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.5e-80 303.5 252 61.1
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.0e-80 303.1 253 60.5
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 2.6e-80 302.8 251 61.0
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.6e-80 302.8 245 62.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 3.3e-80 302.4 247 61.1
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 4.4e-80 302.0 250 61.2
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.7e-80 301.6 249 60.6
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.7e-80 301.6 251 60.2
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.7e-80 301.6 253 60.1
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 7.4e-80 301.2 249 61.8
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 7.4e-80 301.2 250 60.4
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 9.7e-80 300.8 248 60.9
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 9.7e-80 300.8 255 60.4
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 9.7e-80 300.8 247 61.5
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.3e-79 300.4 282 56.4
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.7e-79 300.1 250 62.8
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.2e-79 299.7 255 62.0
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.8e-79 299.3 248 60.9
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 2.8e-79 299.3 183 76.0
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 3.7e-79 298.9 251 58.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.3e-79 298.1 248 60.5
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.3e-79 298.1 249 59.8
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-78 297.4 256 59.0
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.4e-78 297.0 251 59.8
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.4e-78 297.0 265 59.2
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 3.1e-78 295.8 204 70.1
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 9.1e-78 294.3 253 59.7
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.2e-77 293.9 256 57.8
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-77 293.5 254 59.1
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.5e-77 293.5 248 58.9
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 2.0e-77 293.1 248 58.1
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.0e-77 293.1 248 58.9
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.4e-77 292.4 248 60.5
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 4.5e-77 292.0 248 60.5
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.5e-77 292.0 251 58.6
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 4.5e-77 292.0 247 59.1
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 5.9e-77 291.6 250 59.6
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.9e-77 291.6 249 59.0
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.0e-76 290.8 272 55.5
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.0e-76 290.8 252 59.1
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.3e-76 290.4 251 58.6
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.7e-76 290.0 252 57.9
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.7e-76 290.0 247 59.5
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 2.2e-76 289.7 270 55.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 5.0e-76 288.5 253 58.5
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 6.5e-76 288.1 251 55.0
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.4e-75 287.0 195 71.3
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.4e-75 287.0 251 59.4
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.9e-75 286.6 248 60.1
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.9e-75 286.6 253 58.9
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.5e-75 286.2 269 55.4
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 5.5e-75 285.0 253 58.9
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 9.4e-75 284.3 185 70.8
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 6.1e-74 281.6 180 72.2
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.4e-73 280.4 216 62.0
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 2.3e-73 279.6 262 56.5
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 3.0e-73 279.3 194 66.5
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 3.9e-73 278.9 184 67.9
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 8.8e-73 277.7 247 58.7
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 8.8e-73 277.7 201 68.2
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.1e-72 277.3 184 68.5
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 2.6e-72 276.2 247 58.3
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.3e-71 273.9 191 65.4
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.7e-71 273.5 185 68.6
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 2.2e-71 273.1 246 56.5
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 3.7e-71 272.3 191 64.9
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 3.7e-71 272.3 214 61.2
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 4.8e-71 271.9 246 56.5
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 8.2e-71 271.2 249 55.8
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.4e-70 269.6 246 55.3
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.1e-70 269.2 165 75.8
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.1e-70 268.9 269 55.4
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.6e-69 266.9 248 56.0
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.0e-68 264.2 182 66.5
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.0e-68 264.2 345 45.8
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 1.0e-68 264.2 247 55.1
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 6.5e-68 261.5 170 72.9
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.7e-66 256.1 251 52.6
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.6e-64 249.6 216 59.3
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.7e-64 248.4 187 63.1
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.7e-63 245.7 179 66.5
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.4e-62 243.0 180 65.6
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 9.1e-62 241.1 226 54.4
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.6e-61 240.4 180 64.4
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 8.5e-60 234.6 165 65.5
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 3.2e-59 232.6 251 49.8
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 4.2e-59 232.3 216 56.9
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 5.5e-59 231.9 175 60.6
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 9.4e-59 231.1 183 63.4
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.2e-58 230.7 253 50.2
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.6e-58 229.2 262 50.4
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.7e-58 228.8 171 65.5
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 3.4e-56 222.6 140 71.4
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 9.1e-54 214.5 162 64.8
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.6e-53 213.8 183 57.4
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.5e-51 207.2 184 57.6
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.8e-49 200.3 179 60.9
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 5.2e-49 198.7 198 54.0
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 3.7e-47 192.6 184 55.4
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.2e-45 187.6 186 50.5
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 5.9e-45 185.3 135 67.4
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.3e-44 183.3 180 52.8
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 6.6e-44 181.8 176 53.4
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 2.6e-40 169.9 114 71.1
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.3e-39 167.5 187 51.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 4.1e-38 162.5 155 56.8
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 7.8e-37 158.3 156 54.5
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 8.6e-36 154.8 158 51.9
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.2e-34 151.0 95 72.6
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 5.2e-33 145.6 99 68.7
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 2.6e-32 143.3 142 54.2
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.8e-32 142.1 165 50.3
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.2e-30 136.3 184 45.7
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 7.8e-29 131.7 180 43.9
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 6.6e-28 128.6 124 53.2
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.9e-27 127.1 121 50.4
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 4.0e-25 119.4 113 52.2
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.0e-24 117.1 113 50.4
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 7.1e-22 108.6 65 72.3
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 9.2e-22 108.2 128 46.1
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 9.2e-22 108.2 128 46.1
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 5.1e-20 102.4 179 34.6
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 8.6e-20 101.7 70 64.3
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.5e-16 90.9 66 60.6
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 2.6e-16 90.1 123 44.7
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 5.8e-16 89.0 64 64.1
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.9e-15 86.7 64 57.8
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 3.3e-11 73.2 111 43.2
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 9.6e-11 71.6 103 44.7
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.1e-10 70.5 52 59.6
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-10 70.5 103 44.7


User provided reference genes

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