Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 0.0e+00 1156.4 579 100.0
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.2e-253 879.8 579 79.3
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 3.2e-211 738.8 619 65.8
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.5e-208 729.2 652 61.7
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.6e-207 726.5 618 62.8
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.5e-205 719.9 635 62.5
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.5e-205 719.9 639 62.0
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 3.2e-203 712.2 635 62.0
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.7e-202 709.1 631 60.9
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 3.5e-202 708.8 623 61.3
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 7.9e-202 707.6 616 61.4
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.8e-201 706.4 619 61.7
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.8e-201 706.4 616 62.2
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.3e-201 706.1 625 61.3
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.9e-201 705.3 643 61.7
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 8.7e-201 704.1 633 61.3
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.1e-200 703.7 619 61.6
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 3.3e-200 702.2 639 60.6
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 5.6e-200 701.4 619 61.6
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 7.4e-200 701.0 642 60.0
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.6e-199 699.9 616 61.4
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 6.2e-199 698.0 636 60.7
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 6.2e-199 698.0 636 60.7
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 6.2e-199 698.0 626 60.4
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.8e-198 696.4 613 61.7
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 4.0e-198 695.3 617 61.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 6.9e-198 694.5 639 59.5
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 9.0e-198 694.1 617 61.3
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.5e-197 693.3 625 61.3
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 2.0e-197 693.0 623 61.2
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.4e-197 692.2 617 61.3
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 4.5e-197 691.8 635 59.8
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 5.8e-197 691.4 622 61.1
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 7.6e-197 691.0 614 61.2
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.3e-196 690.3 652 58.3
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.9e-196 689.1 628 60.4
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 2.9e-196 689.1 617 61.1
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 3.8e-196 688.7 645 59.8
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.8e-196 688.7 629 61.2
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.4e-195 686.8 633 59.4
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.4e-195 686.8 628 59.4
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.5e-195 686.0 617 60.9
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 4.2e-195 685.3 614 61.4
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.6e-194 683.3 648 58.3
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 2.7e-194 682.6 617 59.6
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.7e-194 682.6 624 59.3
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 2.3e-193 679.5 626 59.4
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.0e-193 679.1 617 60.6
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.9e-192 676.4 617 60.1
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 4.3e-192 675.2 616 61.0
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 4.3e-192 675.2 654 56.9
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.7e-192 674.9 642 58.7
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 7.4e-192 674.5 622 60.0
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 9.6e-192 674.1 618 61.0
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 1.3e-191 673.7 585 62.1
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.8e-191 672.5 616 59.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.2e-189 667.2 616 60.7
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 1.5e-189 666.8 624 58.7
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.7e-188 663.3 626 57.7
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 5.0e-188 661.8 625 58.1
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 5.0e-188 661.8 631 59.7
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 6.5e-188 661.4 641 57.3
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.1e-187 660.6 659 55.7
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.5e-187 658.3 621 58.1
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 5.5e-187 658.3 636 58.6
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 5.5e-187 658.3 653 56.8
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 1.2e-186 657.1 633 58.0
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 3.5e-186 655.6 640 57.7
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.3e-185 653.7 618 57.6
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.3e-185 653.7 614 58.0
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 3.9e-185 652.1 617 59.2
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 6.7e-185 651.4 641 56.8
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.3e-183 647.1 636 57.4
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 6.3e-183 644.8 632 57.8
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 3.1e-182 642.5 612 57.4
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 4.1e-182 642.1 642 56.2
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 5.3e-182 641.7 615 58.4
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 6.9e-182 641.3 622 58.2
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 9.0e-182 641.0 754 51.6
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.2e-181 640.6 617 58.0
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 2.6e-181 639.4 620 58.1
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.4e-181 639.0 621 58.3
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 5.9e-181 638.3 654 55.5
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 7.7e-181 637.9 615 58.0
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.0e-180 637.5 619 57.7
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.0e-180 637.5 643 55.8
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.0e-180 637.5 631 55.2
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 3.8e-180 635.6 638 55.5
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 3.8e-180 635.6 630 56.7
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.1e-179 634.0 622 57.9
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.9e-179 633.3 613 58.1
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.9e-179 633.3 613 58.1
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.9e-179 633.3 624 58.0
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.5e-179 632.9 619 58.0
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.2e-179 632.5 617 56.7
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 9.4e-179 630.9 489 66.7
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 2.1e-178 629.8 507 63.7
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 2.7e-178 629.4 641 55.1
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 4.6e-178 628.6 619 57.4
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 4.6e-178 628.6 609 56.5
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.4e-177 627.1 620 56.1
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 3.7e-175 619.0 624 56.4
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 2.2e-172 609.8 572 58.2
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 3.8e-172 609.0 567 58.4
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.4e-171 607.1 618 55.8
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.6e-170 602.4 622 55.8
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.1e-168 597.4 618 54.7
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 7.7e-165 584.7 619 53.2
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.8e-164 582.4 599 56.6
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 8.0e-162 574.7 665 50.8
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.3e-161 573.2 491 61.7
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 3.8e-156 555.8 548 56.9
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.7e-154 549.7 665 47.2
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 4.0e-153 545.8 463 60.0
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.5e-152 543.9 593 52.1
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 6.3e-151 538.5 609 50.9
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.7e-149 533.1 484 57.2
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.7e-148 530.4 645 46.2
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.5e-147 527.3 470 60.2
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.5e-147 527.3 641 45.7
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 1.8e-145 520.4 455 60.0
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 2.8e-143 513.1 625 50.4
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.7e-143 512.7 398 64.1
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 2.9e-140 503.1 680 44.4
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 8.3e-135 485.0 364 66.8
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 7.8e-133 478.4 308 74.0
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 4.3e-131 472.6 300 75.0
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 2.8e-130 469.9 305 72.5
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.0e-128 463.8 305 75.1
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 4.1e-126 456.1 297 72.7
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 3.3e-115 419.9 556 43.2
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.7e-106 389.4 254 71.7
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.7e-106 389.4 254 71.7
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 6.4e-95 352.4 268 67.2
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.2e-62 242.7 198 66.2
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 3.4e-56 223.8 346 38.2
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 1.3e-39 168.7 251 46.6
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 1.0e-31 142.5 177 48.6
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 3.2e-30 137.5 168 52.4
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 6.8e-28 129.8 311 34.1
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.5e-27 128.6 270 34.4
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.0e-27 128.3 193 45.1
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 3.7e-26 124.0 87 67.8
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.8e-19 99.4 162 45.7
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 1.9e-14 85.1 151 43.7
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 8.9e-12 76.3 134 44.0
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 5.4e-09 67.0 71 49.3
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 9.2e-09 66.2 62 50.0
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.2e-08 65.9 138 39.1
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 3.5e-08 64.3 118 39.8
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 1.9e-06 58.5 149 34.9


User provided reference genes

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