Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 0.0e+00 1228.8 644 100.0
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.2e-189 666.4 625 57.9
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.6e-171 605.9 618 55.2
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.1e-171 605.1 618 55.5
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 5.4e-167 592.0 621 54.1
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.0e-166 590.1 629 53.3
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 4.5e-166 589.0 631 53.6
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.2e-164 582.4 618 54.2
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 4.0e-162 575.9 617 52.8
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 5.2e-162 575.5 620 52.6
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.4e-161 572.4 635 50.6
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 7.5e-161 571.6 617 50.7
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 9.8e-161 571.2 619 51.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.3e-160 570.9 620 52.1
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.7e-158 563.1 617 50.9
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 3.5e-158 562.8 619 50.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.5e-158 562.4 625 51.4
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 3.8e-157 559.3 623 50.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.9e-156 557.0 615 51.9
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 4.3e-156 555.8 596 51.8
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 5.6e-156 555.4 616 51.6
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 5.6e-156 555.4 616 51.6
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.2e-155 554.3 621 50.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 3.6e-155 552.7 615 50.7
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 1.2e-153 547.7 617 50.1
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.0e-153 547.0 617 50.4
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.6e-153 546.6 627 48.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 4.4e-153 545.8 629 49.6
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 3.7e-152 542.7 630 50.0
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.4e-151 540.8 632 49.5
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.9e-151 540.4 632 49.2
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 5.4e-151 538.9 627 49.9
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-150 537.3 632 48.9
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.6e-150 535.8 632 48.9
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 4.6e-150 535.8 617 49.3
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.7e-149 533.9 616 50.2
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-149 533.1 641 48.4
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-149 533.1 632 48.9
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-149 533.1 632 48.9
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-149 531.6 632 48.6
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.3e-148 529.3 632 48.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 4.3e-148 529.3 624 48.2
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 5.6e-148 528.9 623 48.2
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.3e-148 528.5 616 49.8
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 9.5e-148 528.1 602 51.3
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.5e-148 528.1 616 50.5
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.8e-147 526.6 626 48.2
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.4e-146 524.2 622 48.4
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 5.2e-146 522.3 642 48.0
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 5.2e-146 522.3 621 48.0
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.2e-145 521.2 630 48.1
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.4e-145 519.6 625 46.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.4e-145 519.2 624 46.2
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.4e-145 519.2 639 47.7
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.7e-144 517.3 625 49.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 6.4e-144 515.4 622 47.6
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 7.0e-143 511.9 639 46.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 7.0e-143 511.9 623 46.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.1e-142 510.4 639 47.6
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 3.5e-142 509.6 624 47.8
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 7.3e-140 501.9 617 47.2
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.6e-139 500.7 619 47.8
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 2.8e-139 500.0 657 45.8
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-138 497.7 626 47.1
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-138 496.5 626 47.0
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.1e-138 496.5 617 45.4
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 4.0e-138 496.1 626 47.0
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.2e-137 494.6 617 46.8
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.4e-137 493.0 640 44.8
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 5.8e-137 492.3 619 46.2
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 9.9e-137 491.5 618 46.8
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-136 490.3 626 46.3
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.2e-136 490.3 635 46.6
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.7e-136 489.6 622 45.7
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.1e-135 488.0 626 46.3
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.4e-135 487.6 639 45.5
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.3e-133 481.1 630 45.1
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 5.1e-133 479.2 640 46.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 8.6e-133 478.4 646 44.7
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 7.3e-132 475.3 623 46.2
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 6.2e-131 472.2 657 43.8
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-129 467.6 584 46.7
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 4.9e-128 462.6 633 44.5
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 5.4e-127 459.1 624 45.5
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 9.2e-127 458.4 619 43.0
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.2e-126 458.0 638 43.9
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.2e-126 458.0 632 45.7
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.6e-126 457.6 635 43.9
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.6e-126 457.6 638 43.9
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.6e-125 452.2 553 48.3
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.9e-124 450.7 633 44.4
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 8.1e-123 445.3 636 44.2
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.8e-122 444.1 648 42.1
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 9.0e-122 441.8 619 43.1
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.2e-121 441.4 601 43.9
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.4e-121 439.9 620 43.5
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.7e-120 437.6 628 42.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 6.4e-120 435.6 615 42.4
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.6e-113 413.7 633 40.8
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 3.2e-111 406.8 504 47.8
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.4e-111 406.0 605 42.3
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 7.1e-111 405.6 610 41.3
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.5e-110 403.3 561 44.2
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 4.6e-110 402.9 584 43.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.3e-108 396.7 598 42.0
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 6.0e-102 375.9 418 50.5
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.3e-100 370.2 444 48.4
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.2e-99 365.9 460 47.6
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 3.4e-97 360.1 413 49.6
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 7.9e-94 349.0 626 38.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-85 321.2 629 36.1
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 3.0e-85 320.5 400 48.0
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 5.9e-81 306.2 598 37.3
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 5.0e-80 303.1 598 36.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 6.5e-80 302.8 598 37.1
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.9e-79 301.2 344 49.7
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.5e-79 300.8 325 52.6
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 7.2e-79 299.3 598 37.0
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-76 290.4 618 34.3
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.3e-76 290.4 630 33.8
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.6e-73 280.8 393 42.5
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.9e-72 277.3 646 31.9
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 5.2e-69 266.5 608 34.4
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-68 265.0 625 33.6
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.8e-67 260.0 616 33.1
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.4e-66 257.7 403 39.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.9e-64 250.8 604 33.4
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-60 238.0 605 33.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-60 238.0 604 32.9
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-58 231.9 413 37.0
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-55 220.7 595 32.4
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.6e-49 201.8 643 29.4
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.6e-48 196.4 413 34.1
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.2e-42 177.6 442 31.7
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.1e-39 169.1 228 48.7
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-35 155.2 193 48.7
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.3e-32 144.8 348 35.1
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.5e-31 141.4 162 49.4
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-26 125.2 147 46.9
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.1e-26 124.0 104 62.5
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 5.4e-26 123.6 135 51.1
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 3.5e-25 120.9 121 57.0
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-23 115.2 149 45.0
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.9e-23 115.2 120 56.7
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.8e-21 108.6 181 38.7
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.5e-20 105.5 359 27.9
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-19 102.4 363 27.8
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.7e-19 102.1 130 41.5
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-18 98.2 101 52.5
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 5.4e-18 97.1 85 61.2
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.2e-17 95.9 86 58.1
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.7e-17 94.7 95 49.5
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 4.3e-15 87.4 66 63.6
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.2e-14 85.9 74 55.4
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.8e-13 82.0 51 72.5
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-13 81.6 86 51.2
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 7.6e-12 76.6 86 50.0
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.8e-11 74.3 144 39.6
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.4e-10 72.4 117 41.0
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-10 71.6 218 29.8
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.2e-10 70.9 104 44.2
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 1.6e-09 68.9 65 49.2
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 2.7e-09 68.2 217 28.6
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 2.7e-09 68.2 217 28.6
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 6.0e-09 67.0 55 56.4
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-07 61.6 60 50.0


User provided reference genes

Program Settings