Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.5e-200 701.4 363 100.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.8e-172 609.4 348 91.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.7e-99 366.3 360 55.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.6e-99 365.5 351 57.3
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.8e-94 348.6 347 56.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 7.9e-91 338.2 345 56.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.7e-85 320.5 348 54.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.6e-83 312.4 343 50.4
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.1e-81 307.8 347 48.7
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 4.3e-81 305.8 324 53.7
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.3e-80 304.3 353 51.3
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.3e-80 304.3 353 51.3
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.3e-80 304.3 348 50.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.4e-79 300.1 350 50.3
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.0e-79 299.3 328 52.7
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-78 297.7 370 50.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.5e-78 295.8 327 50.8
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.0e-77 294.7 347 49.0
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.0e-77 294.7 332 52.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.0e-77 294.7 351 48.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.9e-77 293.1 351 49.3
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 2.9e-77 293.1 353 49.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.1e-76 291.2 364 47.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.5e-76 290.0 326 49.7
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 9.3e-76 288.1 327 49.2
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 9.3e-76 288.1 358 48.6
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-75 287.3 342 48.5
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.6e-75 287.3 358 48.6
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.1e-75 287.0 364 47.3
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 4.6e-75 285.8 351 48.4
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 7.9e-75 285.0 357 48.2
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.3e-74 283.5 363 48.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.3e-74 283.5 335 50.7
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 3.0e-74 283.1 343 49.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 3.0e-74 283.1 354 50.0
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.9e-74 282.7 356 49.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 5.1e-74 282.3 346 48.0
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 6.7e-74 282.0 351 47.6
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.7e-74 282.0 352 47.7
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 8.7e-74 281.6 354 47.5
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.9e-73 280.4 346 47.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 4.3e-73 279.3 364 48.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 5.7e-73 278.9 351 46.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 7.4e-73 278.5 349 48.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.3e-72 277.7 309 50.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-72 277.3 356 47.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.2e-72 276.9 319 48.9
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.8e-72 275.8 354 46.0
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 4.8e-72 275.8 321 49.2
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.4e-71 274.2 342 48.5
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-71 273.9 329 49.5
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 3.1e-71 273.1 296 53.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.1e-71 272.7 348 46.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.4e-70 269.6 343 47.2
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.4e-70 269.6 348 46.8
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 7.7e-70 268.5 317 49.8
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.3e-69 267.7 316 47.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.9e-69 266.5 321 48.6
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 3.8e-69 266.2 318 47.5
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.8e-69 266.2 346 46.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.0e-69 265.8 312 48.1
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.4e-68 264.2 343 45.2
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.9e-68 263.8 371 42.9
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.2e-68 261.9 329 45.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.2e-67 261.2 346 47.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.6e-67 260.8 354 46.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 7.9e-67 258.5 323 48.0
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.0e-66 258.1 358 45.0
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.4e-66 257.7 317 47.3
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.8e-66 257.3 333 48.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.0e-66 256.5 362 44.8
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 5.1e-66 255.8 356 44.9
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.4e-65 251.9 339 45.1
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.3e-64 251.1 325 47.1
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.2e-64 250.4 326 46.0
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.7e-64 249.6 300 46.7
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.7e-64 249.6 326 46.0
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.8e-64 249.2 318 45.3
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.8e-63 247.3 345 42.9
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.3e-63 245.7 344 46.2
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.9e-63 245.4 290 44.5
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.2e-62 244.6 338 45.0
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.2e-62 244.6 305 45.6
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.6e-62 243.4 326 46.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.6e-62 243.4 350 43.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.6e-62 243.4 320 43.8
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.5e-62 242.7 305 46.2
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 7.7e-62 241.9 254 53.5
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.0e-61 241.5 311 45.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-61 241.1 309 48.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.9e-61 240.0 306 46.7
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.8e-61 239.6 317 45.7
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 5.0e-61 239.2 316 45.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 6.5e-61 238.8 350 43.4
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 8.5e-61 238.4 360 40.6
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.9e-60 237.3 337 43.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.2e-60 236.5 315 45.1
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.5e-60 235.7 337 43.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 7.2e-60 235.3 304 46.7
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.2e-59 234.6 361 41.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.1e-59 233.8 337 43.3
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.1e-59 233.8 338 42.3
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.7e-59 233.4 314 47.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.1e-59 232.3 348 41.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 6.1e-59 232.3 307 43.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.9e-59 231.9 343 42.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.8e-58 230.7 336 42.0
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.8e-58 230.7 330 43.0
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.3e-58 230.3 300 44.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 6.7e-58 228.8 317 42.9
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 6.7e-58 228.8 317 42.9
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.7e-58 228.8 320 42.5
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.0e-57 227.3 314 44.3
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 5.7e-57 225.7 343 40.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.4e-57 225.3 351 40.7
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 9.7e-57 224.9 311 44.1
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 9.7e-57 224.9 318 44.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.3e-56 224.6 391 37.9
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.3e-56 224.6 319 42.6
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.7e-56 223.0 314 43.6
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.2e-56 221.9 322 42.5
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.4e-55 220.3 333 41.1
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 2.4e-55 220.3 337 40.9
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.1e-55 219.5 343 40.2
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 7.0e-55 218.8 333 41.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 9.1e-55 218.4 337 41.5
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 7.7e-54 215.3 336 39.6
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.7e-53 214.2 326 42.6
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 6.5e-53 212.2 244 48.8
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 2.5e-52 210.3 308 43.5
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.5e-52 210.3 351 40.5
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.1e-51 207.2 313 41.5
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.1e-51 207.2 230 51.7
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 8.8e-50 201.8 351 37.3
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.0e-49 200.7 330 38.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.3e-48 198.0 269 46.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.4e-47 194.5 292 41.4
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 3.1e-47 193.4 285 39.6
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 5.5e-44 182.6 283 42.0
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.1e-43 180.6 323 37.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.6e-43 179.9 282 43.3
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.0e-42 176.8 267 38.6
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.2e-42 176.0 304 38.2
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.2e-40 170.6 227 45.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.4e-39 167.2 285 38.9
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.5e-38 163.3 252 40.5
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.9e-38 162.5 236 39.8
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-37 161.8 236 39.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.5e-36 157.1 296 36.5
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-35 154.8 241 40.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 3.6e-35 153.3 145 57.9
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.1e-31 140.2 291 33.0
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.2e-30 138.3 215 40.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.9e-29 133.7 220 36.8
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 8.9e-26 122.1 285 35.1
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.7e-25 119.4 248 33.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 6.3e-24 115.9 131 53.4
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.1e-23 115.2 193 40.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.6e-22 111.3 129 49.6
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 3.5e-22 110.2 132 48.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 5.0e-21 106.3 216 36.6
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 4.0e-18 96.7 132 47.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.2e-17 95.1 189 37.0
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.9e-16 90.5 72 63.9
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.2e-15 87.0 152 37.5
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 4.1e-15 86.7 122 42.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.1e-12 78.6 131 47.3
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.6e-11 74.7 106 44.3
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-11 74.7 63 58.7
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 5.8e-09 66.2 106 41.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.2e-07 58.9 124 37.1


User provided reference genes

Program Settings