Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0071 Ceratophyllum demersum HOM05D000112 ORTHO05D000564 5.0e-31 137.1 68 100.0
CDE02G2644 Ceratophyllum demersum HOM05D000112 ORTHO05D000564 3.3e-27 124.4 68 88.2
MSTRG.16469 Avicennia marina HOM05D000112 ORTHO05D000564 1.4e-09 65.9 40 67.5
MSTRG.27878 Avicennia marina HOM05D000112 ORTHO05D000564 3.1e-09 64.7 58 51.7
EL10Ac6g14000 Beta vulgaris HOM05D000112 ORTHO05D000564 5.4e-09 63.9 43 60.5
Lj9C281G7 Lonicera japonica HOM05D000112 ORTHO05D000564 7.0e-09 63.5 60 50.0
Peaxi162Scf00152g01635 Petunia axillaris HOM05D000112 ORTHO05D000564 9.1e-09 63.2 40 65.0
Actinidia00152 Actinidia chinensis HOM05D000112 ORTHO05D000564 1.2e-08 62.8 43 60.5
SGA_v2.0_scaffold100G29550 Striga asiatica HOM05D000112 ORTHO05D000564 1.2e-08 62.8 35 74.3
SGA_v2.0_scaffold254G45246 Striga asiatica HOM05D000112 ORTHO05D000564 1.2e-08 62.8 34 76.5
TAR628G0850 Trochodendron aralioides HOM05D000112 ORTHO05D000564 1.2e-08 62.8 36 75.0
Hma1.2p1_0052F.1_g029990 Hydrangea macrophylla HOM05D000112 ORTHO05D000564 1.6e-08 62.4 61 49.2
Migut.B00723 Erythranthe guttata HOM05D000112 ORTHO05D000564 2.7e-08 61.6 40 62.5
Eucgr.G00076 Eucalyptus grandis HOM05D000112 ORTHO05D000564 2.7e-08 61.6 35 71.4
Lsat_1_v5_gn_7_74681 Lactuca sativa HOM05D000112 ORTHO05D000564 4.5e-08 60.8 35 71.4
PSO761G0019 Papaver somniferum HOM05D000112 ORTHO05D000564 4.5e-08 60.8 35 74.3
TAR381G0462 Trochodendron aralioides HOM05D000112 ORTHO05D000564 4.5e-08 60.8 35 74.3
vmacro01681 Vaccinium macrocarpon HOM05D000112 ORTHO05D000564 4.5e-08 60.8 60 45.0
MBI03_g07141_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D000564 5.9e-08 60.5 35 68.6
Sabra03G0000400 Salix brachista HOM05D000112 ORTHO05D000564 5.9e-08 60.5 36 72.2
CSS0012676 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D000564 7.7e-08 60.1 34 73.5
MELO3C022932.2 Cucumis melo HOM05D000112 ORTHO05D000564 7.7e-08 60.1 60 46.7
Peaxi162Scf00011g01847 Petunia axillaris HOM05D000112 ORTHO05D000564 7.7e-08 60.1 35 68.6
Atru.chr6.244 Acer truncatum HOM05D000112 ORTHO05D000564 1.0e-07 59.7 59 47.5
Solyc01g103050.3 Solanum lycopersicum HOM05D000112 ORTHO05D000564 1.0e-07 59.7 40 57.5
Actinidia19528 Actinidia chinensis HOM05D000112 ORTHO05D000564 1.3e-07 59.3 43 55.8
Cc02_g23570 Coffea canephora HOM05D000112 ORTHO05D000564 1.3e-07 59.3 60 43.3
CsaV3_5G015710 Cucumis sativus L. HOM05D000112 ORTHO05D000564 1.3e-07 59.3 60 46.7
Manes.10G108100 Manihot esculenta HOM05D000112 ORTHO05D000564 1.3e-07 59.3 35 68.6
PSO210G4727 Papaver somniferum HOM05D000112 ORTHO05D000564 1.3e-07 59.3 35 71.4
Potri.003G001000 Populus trichocarpa HOM05D000112 ORTHO05D000564 1.3e-07 59.3 36 69.4
PGSC0003DMG400020711 Solanum tuberosum HOM05D000112 ORTHO05D000564 1.3e-07 59.3 35 65.7
Nitab4.5_0002261g0030 Nicotiana tabacum HOM05D000112 ORTHO05D000564 1.7e-07 58.9 35 65.7
Sopen01g045470 Solanum pennellii HOM05D000112 ORTHO05D000564 1.7e-07 58.9 53 49.1
SGA_v2.0_scaffold22G09974 Striga asiatica HOM05D000112 ORTHO05D000564 1.7e-07 58.9 35 71.4
CiPaw.01G077400 Carya illinoinensis HOM05D000112 ORTHO05D000564 2.3e-07 58.5 53 50.9
CiPaw.05G001700 Carya illinoinensis HOM05D000112 ORTHO05D000564 2.3e-07 58.5 58 46.6
FvH4_5g27860 Fragaria vesca HOM05D000112 ORTHO05D000564 2.9e-07 58.2 35 68.6
FAN04G2815 Fragaria x ananassa HOM05D000112 ORTHO05D000564 2.9e-07 58.2 35 68.6
FAN08G2570 Fragaria x ananassa HOM05D000112 ORTHO05D000564 2.9e-07 58.2 35 68.6
Prupe.1G585200 Prunus persica HOM05D000112 ORTHO05D000564 2.9e-07 58.2 58 46.6
THA.LOC104817369 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 2.9e-07 58.2 53 52.8
GSVIVG01027166001 Vitis vinifera HOM05D000112 ORTHO05D000564 2.9e-07 58.2 53 47.2
Migut.B01886 Erythranthe guttata HOM05D000112 ORTHO05D000564 3.8e-07 57.8 35 68.6
HanXRQChr11g0347271 Helianthus annuus HOM05D000112 ORTHO05D000564 3.8e-07 57.8 35 68.6
MD08G1247700 Malus domestica HOM05D000112 ORTHO05D000564 3.8e-07 57.8 35 68.6
Oeu000157.1 Olea europaea HOM05D000112 ORTHO05D000564 3.8e-07 57.8 35 65.7
RcHm_v2.0_Chr7g0219771 Rosa chinensis HOM05D000112 ORTHO05D000564 3.8e-07 57.8 35 68.6
Thecc.06G017800 Theobroma cacao HOM05D000112 ORTHO05D000564 3.8e-07 57.8 58 44.8
TAR374G0857 Trochodendron aralioides HOM05D000112 ORTHO05D000564 3.8e-07 57.8 58 43.1
GSVIVG01037136001 Vitis vinifera HOM05D000112 ORTHO05D000564 3.8e-07 57.8 58 48.3
CAN.G855.50 Capsicum annuum HOM05D000112 ORTHO05D000564 5.0e-07 57.4 35 65.7
Ciclev10000491m.g Citrus clementina HOM05D000112 ORTHO05D000564 5.0e-07 57.4 35 65.7
ECA236G4157 Erigeron canadensis HOM05D000112 ORTHO05D000564 5.0e-07 57.4 60 43.3
PGR142G0559 Punica granatum HOM05D000112 ORTHO05D000564 5.0e-07 57.4 60 45.0
Sabra01G0173700 Salix brachista HOM05D000112 ORTHO05D000564 5.0e-07 57.4 37 67.6
SalBow3G0322 Salvia bowleyana HOM05D000112 ORTHO05D000564 5.0e-07 57.4 58 46.6
TAR376G1209 Trochodendron aralioides HOM05D000112 ORTHO05D000564 5.0e-07 57.4 63 47.6
Zm00001eb082150 Zea mays HOM05D000112 ORTHO05D000564 5.0e-07 57.4 35 68.6
Atru.chr5.684 Acer truncatum HOM05D000112 ORTHO05D000564 6.6e-07 57.0 65 49.2
Aqoxy5G01851 Aquilegia oxysepala HOM05D000112 ORTHO05D000564 6.6e-07 57.0 35 65.7
AL5G44410 Arabidopsis lyrata HOM05D000112 ORTHO05D000564 6.6e-07 57.0 38 57.9
AT3G61830 Arabidopsis thaliana HOM05D000112 ORTHO05D000564 6.6e-07 57.0 38 57.9
CARHR172160 Cardamine hirsuta HOM05D000112 ORTHO05D000564 6.6e-07 57.0 38 57.9
Cpa.g.sc173.22 Carica papaya HOM05D000112 ORTHO05D000564 6.6e-07 57.0 51 49.0
Haze_15673 Corylus avellana HOM05D000112 ORTHO05D000564 6.6e-07 57.0 52 48.1
Thhalv10005857m.g Eutrema salsugineum HOM05D000112 ORTHO05D000564 6.6e-07 57.0 38 57.9
Potri.004G228800 Populus trichocarpa HOM05D000112 ORTHO05D000564 6.6e-07 57.0 37 67.6
QL02p103292 Quercus lobata HOM05D000112 ORTHO05D000564 6.6e-07 57.0 35 65.7
THA.LOC104802080 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 6.6e-07 57.0 58 51.7
GSVIVG01023149001 Vitis vinifera HOM05D000112 ORTHO05D000564 6.6e-07 57.0 45 55.6
Os04g0442000 Oryza sativa ssp. japonica HOM05D000112 ORTHO05D000564 8.6e-07 56.6 59 52.5
Sabra14G0073500 Salix brachista HOM05D000112 ORTHO05D000564 8.6e-07 56.6 38 60.5
Sed0021231 Sechium edule HOM05D000112 ORTHO05D000564 8.6e-07 56.6 60 45.0
Hund15366 Selenicereus undatus HOM05D000112 ORTHO05D000564 8.6e-07 56.6 35 65.7
Gohir.D07G142100 Gossypium hirsutum HOM05D000112 ORTHO05D000564 1.1e-06 56.2 40 55.0
Gorai.001G153900 Gossypium raimondii HOM05D000112 ORTHO05D000564 1.1e-06 56.2 40 55.0
Os02g0557200 Oryza sativa ssp. japonica HOM05D000112 ORTHO05D000564 1.1e-06 56.2 58 48.3
Hund11378 Selenicereus undatus HOM05D000112 ORTHO05D000564 1.1e-06 56.2 52 50.0
Aa31LG1G4580 Aethionema arabicum HOM05D000112 ORTHO05D000564 1.5e-06 55.8 60 48.3
MSTRG.17353 Avicennia marina HOM05D000112 ORTHO05D000564 1.5e-06 55.8 35 62.9
AUR62004506 Chenopodium quinoa HOM05D000112 ORTHO05D000564 1.5e-06 55.8 51 47.1
FAN18G3070 Fragaria x ananassa HOM05D000112 ORTHO05D000564 1.5e-06 55.8 35 65.7
BcaB02g08140 Brassica carinata HOM05D000112 ORTHO05D000564 1.9e-06 55.5 40 55.0
AUR62023447 Chenopodium quinoa HOM05D000112 ORTHO05D000564 1.9e-06 55.5 51 47.1
Dinv29630 Davidia involucrata HOM05D000112 ORTHO05D000564 1.9e-06 55.5 60 45.0
Oeu008707.1 Olea europaea HOM05D000112 ORTHO05D000564 1.9e-06 55.5 53 50.9
Potri.014G100100 Populus trichocarpa HOM05D000112 ORTHO05D000564 1.9e-06 55.5 38 60.5
TAR629G0258 Trochodendron aralioides HOM05D000112 ORTHO05D000564 1.9e-06 55.5 35 62.9
vmacro12665 Vaccinium macrocarpon HOM05D000112 ORTHO05D000564 1.9e-06 55.5 53 50.9
AT1G59750 Arabidopsis thaliana HOM05D000112 ORTHO05D000564 2.5e-06 55.1 36 63.9
ClCG11G000280 Citrullus lanatus HOM05D000112 ORTHO05D000564 2.5e-06 55.1 60 43.3
Rhsim01G0174100 Rhododendron simsii HOM05D000112 ORTHO05D000564 2.5e-06 55.1 56 46.4
Sp5g01540 Schrenkiella parvula HOM05D000112 ORTHO05D000564 2.5e-06 55.1 38 57.9
THA.LOC104819853 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 2.5e-06 55.1 36 63.9
CAN.G1415.22 Capsicum annuum HOM05D000112 ORTHO05D000564 3.3e-06 54.7 55 45.5
Duzib235G1502 Durio zibethinus HOM05D000112 ORTHO05D000564 3.3e-06 54.7 35 62.9
MBI07_g37210_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D000564 3.3e-06 54.7 35 65.7
Peaxi162Scf00345g00027 Petunia axillaris HOM05D000112 ORTHO05D000564 3.3e-06 54.7 35 60.0
Potri.002G172800 Populus trichocarpa HOM05D000112 ORTHO05D000564 3.3e-06 54.7 58 46.6
THA.LOC104813046 Tarenaya hassleriana HOM05D000112 ORTHO05D000564 3.3e-06 54.7 35 60.0
unitig_578.g15962 Utricularia gibba HOM05D000112 ORTHO05D000564 3.3e-06 54.7 37 64.9
Carub.0005s2857 Capsella rubella HOM05D000112 ORTHO05D000564 4.2e-06 54.3 34 64.7
Cfa004446 Carpinus fangiana HOM05D000112 ORTHO05D000564 4.2e-06 54.3 58 43.1
ClCG09G009470 Citrullus lanatus HOM05D000112 ORTHO05D000564 4.2e-06 54.3 37 59.5
Gohir.A07G136900 Gossypium hirsutum HOM05D000112 ORTHO05D000564 4.2e-06 54.3 40 52.5
Gohir.A10G158300 Gossypium hirsutum HOM05D000112 ORTHO05D000564 4.2e-06 54.3 35 60.0
Gohir.D10G084000 Gossypium hirsutum HOM05D000112 ORTHO05D000564 4.2e-06 54.3 35 60.0
Gorai.011G091100 Gossypium raimondii HOM05D000112 ORTHO05D000564 4.2e-06 54.3 35 60.0
Solyc01g096070.3 Solanum lycopersicum HOM05D000112 ORTHO05D000564 4.2e-06 54.3 53 47.2
Sopen01g039790 Solanum pennellii HOM05D000112 ORTHO05D000564 4.2e-06 54.3 53 47.2
AL2G17120 Arabidopsis lyrata HOM05D000112 ORTHO05D000564 5.5e-06 53.9 58 46.6
BcaB01g03205 Brassica carinata HOM05D000112 ORTHO05D000564 5.5e-06 53.9 34 61.8
BcaC02g10654 Brassica carinata HOM05D000112 ORTHO05D000564 5.5e-06 53.9 58 44.8
C04p26280 Brassica napus HOM05D000112 ORTHO05D000564 5.5e-06 53.9 58 44.8
BolC4t24179H Brassica oleracea HOM05D000112 ORTHO05D000564 5.5e-06 53.9 58 44.8
Cfa003787 Carpinus fangiana HOM05D000112 ORTHO05D000564 5.5e-06 53.9 52 50.0
COL.COLO4_06270 Corchorus olitorius HOM05D000112 ORTHO05D000564 5.5e-06 53.9 34 64.7
Thhalv10001365m.g Eutrema salsugineum HOM05D000112 ORTHO05D000564 5.5e-06 53.9 35 60.0
Gohir.A11G097700 Gossypium hirsutum HOM05D000112 ORTHO05D000564 5.5e-06 53.9 53 49.1
Manes.01G245000 Manihot esculenta HOM05D000112 ORTHO05D000564 5.5e-06 53.9 58 44.8
Nitab4.5_0001763g0030 Nicotiana tabacum HOM05D000112 ORTHO05D000564 5.5e-06 53.9 56 44.6
PSO384G2500 Papaver somniferum HOM05D000112 ORTHO05D000564 5.5e-06 53.9 53 47.2
Sed0017697 Sechium edule HOM05D000112 ORTHO05D000564 5.5e-06 53.9 37 59.5
Sed0027701 Sechium edule HOM05D000112 ORTHO05D000564 5.5e-06 53.9 60 43.3
Aa31LG1G27880 Aethionema arabicum HOM05D000112 ORTHO05D000564 7.2e-06 53.5 34 61.8
BcaC02g12669 Brassica carinata HOM05D000112 ORTHO05D000564 7.2e-06 53.5 32 65.6
A09p53860 Brassica napus HOM05D000112 ORTHO05D011241 7.2e-06 53.5 38 55.3
Carub.0002s0561 Capsella rubella HOM05D000112 ORTHO05D000564 7.2e-06 53.5 58 44.8
CARHR053360 Cardamine hirsuta HOM05D000112 ORTHO05D000564 7.2e-06 53.5 35 62.9
PSO135G0674 Papaver somniferum HOM05D000112 ORTHO05D000564 7.2e-06 53.5 53 47.2
PGR102G1760 Punica granatum HOM05D000112 ORTHO05D000564 7.2e-06 53.5 31 64.5
Sc01g0002570 Simmondsia chinensis HOM05D000112 ORTHO05D000564 7.2e-06 53.5 38 55.3
PGSC0003DMG400000118 Solanum tuberosum HOM05D000112 ORTHO05D000564 7.2e-06 53.5 53 47.2
TWI14G0269 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 7.2e-06 53.5 40 55.0
TWI59G1370 Tripterygium wilfordii HOM05D000112 ORTHO05D000564 7.2e-06 53.5 38 60.5
arahy.Tifrunner.gnm1.ann1.9WI6AM Arachis hypogaea HOM05D000112 ORTHO05D000564 9.5e-06 53.1 45 48.9
arahy.Tifrunner.gnm1.ann1.KKF3ZC Arachis hypogaea HOM05D000112 ORTHO05D000564 9.5e-06 53.1 45 48.9
BcaC02g12681 Brassica carinata HOM05D000112 ORTHO05D000564 9.5e-06 53.1 33 63.6
BcaC07g42613 Brassica carinata HOM05D000112 ORTHO05D000564 9.5e-06 53.1 32 65.6
C04p01400 Brassica napus HOM05D000112 ORTHO05D000564 9.5e-06 53.1 33 63.6
C08p36660 Brassica napus HOM05D000112 ORTHO05D011241 9.5e-06 53.1 34 61.8
BolC4t21793H Brassica oleracea HOM05D000112 ORTHO05D000564 9.5e-06 53.1 33 63.6
Carub.0004s2924 Capsella rubella HOM05D000112 ORTHO05D000564 9.5e-06 53.1 33 63.6
Duzib138G1864 Durio zibethinus HOM05D000112 ORTHO05D000564 9.5e-06 53.1 55 41.8
Eucgr.B03551 Eucalyptus grandis HOM05D000112 ORTHO05D000564 9.5e-06 53.1 43 55.8
Lj9C600T2 Lonicera japonica HOM05D000112 ORTHO05D000564 9.5e-06 53.1 58 41.4
Thecc.01G340700 Theobroma cacao HOM05D000112 ORTHO05D000564 9.5e-06 53.1 58 43.1


User provided reference genes

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