Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 1.6e-244 849.0 431 100.0
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.3e-152 542.0 427 64.9
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.4e-149 532.3 411 65.5
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 6.4e-148 528.1 402 64.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 3.0e-145 519.2 375 66.4
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 3.0e-145 519.2 432 63.0
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.9e-144 516.5 375 68.0
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 1.9e-144 516.5 382 66.2
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 4.3e-144 515.4 425 63.1
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 7.3e-144 514.6 425 63.1
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 1.2e-143 513.8 377 66.3
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.6e-143 512.3 373 67.6
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.1e-142 510.8 372 66.9
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.4e-142 510.4 378 64.3
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.8e-142 510.0 373 66.8
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 3.1e-142 509.2 390 64.1
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 4.0e-142 508.8 373 66.8
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 6.8e-142 508.1 374 66.3
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 2.0e-141 506.5 425 61.2
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 2.6e-141 506.1 379 64.9
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 3.4e-141 505.8 387 65.6
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 4.4e-141 505.4 372 65.9
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.4e-141 505.4 402 61.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 7.5e-141 504.6 384 64.3
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 1.7e-140 503.4 373 65.4
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 6.4e-140 501.5 374 64.7
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 8.3e-140 501.1 418 60.0
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.4e-139 500.4 389 62.7
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.4e-139 500.4 435 59.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.9e-139 500.0 381 63.5
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 7.0e-139 498.0 377 66.0
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 7.0e-139 498.0 373 65.7
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.2e-138 497.3 374 63.9
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.6e-138 496.9 373 64.9
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 2.1e-138 496.5 374 64.2
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 2.1e-138 496.5 416 60.1
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 2.7e-138 496.1 374 63.4
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.6e-138 495.4 401 60.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 4.6e-138 495.4 378 65.6
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.0e-138 495.0 401 60.8
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-137 493.8 390 64.9
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.7e-137 493.4 403 60.8
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 5.1e-137 491.9 381 64.3
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 6.6e-137 491.5 423 60.3
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.1e-136 490.7 371 65.2
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.5e-136 489.6 409 60.1
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.5e-136 489.6 373 63.3
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 7.3e-136 488.0 397 61.2
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.2e-135 487.3 382 62.6
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.2e-135 487.3 412 60.0
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.6e-135 486.9 420 58.3
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 3.6e-135 485.7 373 62.5
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.7e-135 485.3 414 58.7
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 8.1e-135 484.6 443 57.6
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.4e-134 483.8 370 64.1
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.8e-134 483.4 375 63.2
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 3.1e-134 482.6 423 58.2
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 5.2e-134 481.9 378 63.2
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 5.2e-134 481.9 373 63.0
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 2.0e-133 479.9 406 59.4
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.4e-133 479.2 401 59.6
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.7e-132 476.9 371 64.7
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 6.4e-132 474.9 373 64.6
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 8.3e-132 474.6 375 63.2
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 8.3e-132 474.6 404 59.4
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 1.1e-131 474.2 379 60.7
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.9e-131 473.4 411 58.9
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.4e-131 473.0 383 61.6
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 7.3e-128 461.5 376 60.1
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 7.3e-128 461.5 371 62.0
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 1.6e-127 460.3 399 57.9
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.1e-126 457.6 380 60.3
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 2.4e-126 456.4 369 62.3
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.1e-126 456.1 352 63.4
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 8.9e-126 454.5 369 62.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 2.6e-125 453.0 369 61.8
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.7e-124 450.3 369 60.7
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 2.2e-124 449.9 369 61.0
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 2.2e-124 449.9 373 61.4
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 8.4e-124 448.0 372 60.2
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.4e-123 446.4 371 60.1
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.1e-122 443.4 374 59.1
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 6.0e-122 441.8 390 58.7
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 6.0e-122 441.8 390 58.7
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 3.0e-121 439.5 372 59.7
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 3.0e-121 439.5 371 59.3
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 3.9e-121 439.1 370 59.2
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.5e-120 437.2 370 58.6
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 2.8e-119 433.0 333 63.4
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 2.8e-119 433.0 373 58.7
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 6.2e-119 431.8 396 54.8
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 8.1e-119 431.4 376 56.4
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 4.0e-118 429.1 416 53.8
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 6.9e-118 428.3 416 52.6
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.3e-116 424.1 373 57.1
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.4e-115 420.6 432 51.4
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.4e-115 420.6 350 60.6
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 7.1e-115 418.3 422 51.4
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-113 414.1 347 60.5
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 4.3e-112 409.1 389 53.7
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.6e-111 407.1 422 50.7
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-110 403.3 329 61.4
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 8.4e-108 394.8 299 65.6
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 4.2e-107 392.5 371 53.4
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 7.9e-106 388.3 363 54.3
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.0e-105 386.3 361 53.5
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.6e-101 373.2 340 57.1
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 3.5e-98 362.8 351 56.1
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 3.0e-97 359.8 256 70.7
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 5.7e-96 355.5 422 46.7
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 5.7e-96 355.5 266 68.4
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.3e-95 354.4 354 54.2
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.1e-94 351.3 375 50.1
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.4e-94 350.9 309 57.6
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 5.8e-93 345.5 340 51.5
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 5.5e-91 339.0 355 50.4
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 3.1e-86 323.2 381 48.8
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.4e-81 307.8 369 47.7
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 1.1e-72 278.1 225 61.3
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 1.4e-70 271.2 222 59.0
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.5e-69 266.2 201 67.2
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 6.3e-63 245.7 315 46.7
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 2.1e-58 230.7 329 41.9
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.8e-54 217.6 207 57.0
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 5.0e-52 209.5 185 57.8
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 5.2e-41 172.9 167 52.1
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 2.3e-36 157.5 227 39.6
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 2.5e-35 154.1 117 64.1
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.6e-34 151.4 157 48.4
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 4.7e-34 149.8 113 63.7
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 6.2e-34 149.4 113 63.7
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 8.0e-34 149.1 118 61.9
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 1.4e-33 148.3 155 47.1
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 2.0e-32 144.4 113 60.2
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 7.5e-32 142.5 105 62.9
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-30 137.5 108 62.0
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 3.2e-30 137.1 103 62.1
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 4.1e-30 136.7 164 45.7
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 8.6e-28 129.0 111 55.9
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.5e-27 128.3 111 54.1
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 2.4e-22 110.9 137 49.6
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 2.7e-21 107.5 91 61.5
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 1.0e-20 105.5 324 25.6
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.1e-17 95.5 73 68.5
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 1.4e-17 95.1 124 46.8
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 4.0e-17 93.6 75 61.3
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 4.0e-17 93.6 75 61.3
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 1.2e-16 92.0 73 64.4
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 7.6e-16 89.4 79 58.2
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 2.9e-15 87.4 109 43.1
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 6.4e-15 86.3 74 56.8
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 2.1e-13 81.3 91 50.5
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 6.0e-13 79.7 53 69.8
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-11 75.5 62 59.7
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-11 75.5 62 59.7
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-11 75.5 62 59.7
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-11 75.5 62 59.7
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.1e-11 75.5 71 54.9
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 3.3e-11 73.9 63 63.5
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 2.1e-10 71.2 106 38.7
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 6.2e-10 69.7 62 56.5
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 1.1e-09 68.9 396 24.0
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 5.2e-09 66.6 61 55.7
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 8.9e-09 65.9 58 56.9
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.5e-08 65.1 52 55.8
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 2.0e-08 64.7 59 52.5
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 9.9e-08 62.4 141 34.8
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 1.7e-07 61.6 76 46.1
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 1.9e-06 58.2 301 25.9
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 3.2e-06 57.4 321 27.1


User provided reference genes

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