Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 6.0e-268 927.2 524 100.0
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.9e-222 775.4 469 91.3
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 3.0e-174 615.9 510 70.6
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 5.3e-171 605.1 544 67.6
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 2.5e-165 586.3 498 69.5
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 5.3e-163 578.6 509 68.4
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 9.0e-163 577.8 510 67.8
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.5e-162 575.5 510 67.1
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.8e-162 575.1 496 68.5
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 1.1e-160 570.9 509 66.6
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 1.1e-160 570.9 530 65.3
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.4e-160 570.5 507 66.5
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 2.5e-160 569.7 494 68.8
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 2.5e-160 569.7 521 65.8
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.0e-158 564.3 502 66.1
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 1.3e-158 563.9 494 67.4
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 5.1e-158 562.0 503 66.8
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 6.7e-158 561.6 495 66.9
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 2.5e-157 559.7 506 66.4
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 4.3e-157 558.9 496 67.1
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 4.3e-157 558.9 499 66.7
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 6.2e-156 555.1 497 66.2
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 8.2e-156 554.7 508 65.6
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 1.4e-155 553.9 507 68.0
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.4e-155 553.9 497 66.4
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 3.4e-154 549.3 509 66.0
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 2.2e-153 546.6 520 63.8
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 3.8e-153 545.8 508 64.2
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 6.5e-153 545.0 497 66.0
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 1.1e-152 544.3 497 65.2
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 1.6e-151 540.4 500 64.2
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 1.6e-151 540.4 499 64.9
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 4.6e-151 538.9 497 65.2
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 4.6e-151 538.9 509 64.6
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 6.0e-151 538.5 505 63.6
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 7.9e-151 538.1 460 69.1
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.8e-150 537.0 492 65.9
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 1.8e-150 537.0 460 68.9
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 1.9e-149 533.5 496 63.7
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 1.9e-149 533.5 462 67.1
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 1.9e-149 533.5 497 65.2
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 7.4e-149 531.6 520 61.5
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 3.7e-148 529.3 509 63.1
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 4.8e-148 528.9 460 67.0
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 1.8e-147 526.9 462 66.5
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 3.1e-147 526.2 460 66.5
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 3.1e-147 526.2 495 62.8
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.5e-146 523.9 504 63.7
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 2.0e-146 523.5 507 61.9
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.6e-146 523.1 493 64.1
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 5.9e-146 521.9 491 64.2
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 7.7e-146 521.5 494 64.0
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 1.0e-145 521.2 496 63.3
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 1.7e-145 520.4 512 61.7
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 4.2e-144 515.8 496 63.1
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 4.2e-144 515.8 493 64.5
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 2.7e-143 513.1 502 62.9
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 3.6e-143 512.7 460 65.0
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 4.6e-143 512.3 510 62.2
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 4.6e-143 512.3 496 62.3
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 4.6e-143 512.3 496 62.3
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 6.1e-143 511.9 485 63.5
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 6.7e-142 508.4 495 61.8
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 2.5e-141 506.5 493 61.9
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 3.3e-141 506.1 497 63.0
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 4.3e-141 505.8 456 64.7
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 3.7e-140 502.7 496 61.1
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 4.1e-139 499.2 460 64.8
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 4.1e-139 499.2 500 60.8
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 4.5e-138 495.7 506 60.3
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 1.3e-137 494.2 508 60.0
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.7e-137 493.8 513 57.9
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.8e-137 492.7 499 61.5
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 6.5e-137 491.9 516 60.9
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 2.3e-134 483.4 460 64.8
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 3.9e-134 482.6 530 57.4
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 4.4e-133 479.2 473 61.3
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 1.7e-132 477.2 389 69.4
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 6.3e-132 475.3 527 56.0
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 1.8e-131 473.8 390 69.0
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 4.5e-130 469.2 389 69.7
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.1e-128 464.5 493 60.4
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 7.2e-128 461.8 457 62.6
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 8.0e-127 458.4 389 67.9
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 1.4e-126 457.6 502 56.8
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.6e-125 453.4 459 61.7
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 4.5e-122 442.6 390 64.9
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 8.0e-119 431.8 392 65.6
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 9.4e-112 408.3 524 52.9
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 8.3e-108 395.2 502 51.0
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 1.3e-105 387.9 478 50.6
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 6.3e-100 369.0 398 58.8
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 1.8e-99 367.5 478 50.2
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 8.9e-94 348.6 460 51.5
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 8.3e-92 342.0 341 64.5
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.1e-91 341.7 358 60.9
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 9.2e-91 338.6 285 68.8
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 2.7e-90 337.0 385 57.4
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 1.1e-88 331.6 357 59.1
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 2.5e-88 330.5 334 62.6
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 2.0e-85 320.9 388 56.2
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 4.1e-83 313.2 538 46.3
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 8.6e-81 305.4 340 60.0
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 7.3e-80 302.4 308 64.6
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 2.8e-79 300.4 540 44.8
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 5.4e-75 286.2 308 60.1
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 6.0e-66 256.1 333 52.6
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 9.6e-64 248.8 276 57.6
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 3.6e-63 246.9 239 63.6
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 1.5e-61 241.5 248 62.5
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.8e-60 236.9 316 52.8
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 3.8e-60 236.9 248 61.7
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 1.1e-59 235.3 256 53.9
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 2.3e-57 227.6 130 82.3
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 6.6e-57 226.1 156 73.7
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 3.3e-56 223.8 130 80.8
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 6.2e-55 219.5 385 46.8
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 1.1e-54 218.8 141 75.9
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 1.4e-43 181.8 470 40.9
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.8e-39 166.8 358 37.2
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 6.9e-38 162.9 84 88.1
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 4.6e-34 150.2 477 30.4
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 6.3e-31 139.8 167 50.3
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.2e-28 131.3 127 66.1
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 6.5e-28 129.8 121 68.6
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 2.5e-24 117.9 124 62.1
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.2e-23 114.8 72 75.0
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.8e-22 111.7 150 47.3
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 4.1e-22 110.5 66 77.3
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.9e-22 109.8 66 78.8
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.2e-19 100.5 64 78.1
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 3.9e-17 94.0 81 58.0
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 9.7e-16 89.4 82 56.1
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 3.7e-15 87.4 87 67.8
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.7e-12 78.6 78 65.4
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 5.0e-12 77.0 50 70.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 7.5e-08 63.2 304 28.6


User provided reference genes

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