Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.5e-161 571.6 297 100.0
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 4.7e-110 401.7 288 77.8
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.0e-108 396.4 297 68.7
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.2e-107 392.9 295 68.8
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 6.4e-107 391.3 297 67.7
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 6.4e-107 391.3 297 67.7
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 8.4e-107 391.0 297 69.4
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.4e-106 390.2 297 68.7
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 5.4e-106 388.3 297 67.7
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.2e-105 387.1 297 67.0
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.2e-105 387.1 297 67.0
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.6e-105 386.7 297 67.0
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 3.5e-105 385.6 297 64.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 6.0e-105 384.8 297 68.4
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 2.3e-104 382.9 297 66.3
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 3.0e-104 382.5 297 66.7
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 3.9e-104 382.1 297 67.3
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 3.9e-104 382.1 297 67.3
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 3.9e-104 382.1 297 66.7
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 5.1e-104 381.7 297 66.3
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.1e-103 380.6 297 66.3
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 7.3e-103 377.9 297 66.3
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 9.6e-103 377.5 297 65.3
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 2.1e-102 376.3 297 65.3
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.1e-102 376.3 297 63.6
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 4.7e-102 375.2 297 67.7
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 4.0e-101 372.1 297 65.0
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.9e-101 371.3 299 65.6
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 6.9e-101 371.3 297 65.0
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 9.0e-101 370.9 297 63.3
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 9.0e-101 370.9 297 64.3
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.2e-100 370.5 298 65.4
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.2e-100 370.5 297 64.3
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 1.5e-100 370.2 317 60.9
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.5e-100 370.2 297 65.3
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 2.0e-100 369.8 297 65.0
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 2.0e-100 369.8 297 65.0
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 2.0e-100 369.8 295 64.1
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 3.4e-100 369.0 297 63.6
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 3.4e-100 369.0 299 64.2
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 5.8e-100 368.2 297 64.3
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 5.8e-100 368.2 297 63.3
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.8e-100 368.2 321 62.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.8e-100 368.2 296 65.5
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 9.9e-100 367.5 300 64.3
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.2e-99 366.3 297 65.7
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.2e-99 366.3 297 64.3
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.4e-98 363.6 297 64.0
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.9e-98 363.2 297 65.0
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 2.4e-98 362.8 297 64.3
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 2.4e-98 362.8 297 64.0
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.4e-98 362.8 297 64.3
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 3.2e-98 362.5 297 63.6
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 3.2e-98 362.5 301 64.1
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.2e-98 362.1 297 63.3
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.2e-97 360.5 296 63.5
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 4.6e-97 358.6 297 63.6
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 6.0e-97 358.2 328 60.4
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.3e-96 357.1 326 58.9
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.3e-96 357.1 307 61.9
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.3e-96 357.1 307 61.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 3.0e-96 355.9 297 62.0
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 5.1e-96 355.1 298 64.4
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 5.1e-96 355.1 297 63.0
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.1e-96 355.1 296 63.2
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 6.6e-96 354.8 298 64.1
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.9e-95 353.2 273 67.0
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 3.3e-95 352.4 297 61.3
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 4.3e-95 352.1 295 63.7
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.6e-95 351.7 323 59.4
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 5.6e-95 351.7 297 61.6
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 9.6e-95 350.9 308 62.0
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.3e-94 350.5 297 62.3
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 4.8e-94 348.6 352 54.0
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.8e-94 348.6 299 62.9
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 1.1e-93 347.4 298 60.7
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.4e-93 347.1 299 61.9
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.8e-93 346.7 294 62.9
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 2.4e-93 346.3 289 66.8
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 2.4e-93 346.3 299 62.5
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 2.4e-93 346.3 288 64.6
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 4.0e-93 345.5 298 61.4
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 9.0e-93 344.4 299 61.2
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.0e-92 343.2 295 61.0
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.0e-92 343.2 299 62.2
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 3.4e-92 342.4 298 61.1
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 5.8e-92 341.7 297 60.9
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 9.9e-92 340.9 303 59.7
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.9e-91 339.3 298 60.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 6.4e-91 338.2 297 59.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.1e-90 337.4 306 60.8
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 4.2e-90 335.5 297 59.6
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 3.5e-89 332.4 298 59.7
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 7.9e-89 331.3 300 59.7
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 3.9e-88 328.9 299 59.9
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.1e-87 327.4 297 59.9
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.5e-87 327.0 311 56.6
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.5e-87 327.0 299 59.2
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.5e-87 327.0 301 59.5
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.5e-87 327.0 298 57.0
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 4.3e-87 325.5 296 58.4
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 5.6e-87 325.1 298 62.4
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.3e-86 323.9 297 59.9
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 3.7e-86 322.4 299 59.2
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 8.1e-86 321.2 297 58.6
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 9.0e-85 317.8 239 67.4
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.5e-84 317.0 299 58.2
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 3.4e-84 315.8 238 65.5
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 3.4e-84 315.8 301 56.1
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.7e-83 313.5 291 59.1
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.9e-83 312.8 292 58.9
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.9e-82 310.1 342 52.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 3.2e-82 309.3 289 59.9
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 8.2e-78 294.7 308 52.6
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.5e-76 290.4 239 61.1
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 1.5e-76 290.4 277 55.6
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.0e-76 290.0 256 60.9
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 7.6e-76 288.1 314 52.2
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 8.4e-75 284.6 196 72.4
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.9e-74 283.5 240 62.1
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 2.5e-74 283.1 302 54.0
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 2.1e-73 280.0 196 68.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.6e-70 270.4 297 55.9
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 4.8e-70 268.9 217 67.3
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.4e-69 266.5 301 51.2
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.5e-68 263.8 297 51.5
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 7.7e-68 261.5 289 51.9
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.5e-66 256.5 210 66.2
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.6e-65 252.3 279 50.5
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 4.6e-65 252.3 283 53.7
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 7.9e-65 251.5 297 49.8
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 4.3e-63 245.7 297 49.5
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 5.7e-63 245.4 209 63.2
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.3e-62 244.2 372 42.7
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 7.7e-60 235.0 209 59.8
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 3.8e-59 232.6 209 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.4e-58 230.7 216 55.6
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 3.9e-56 222.6 317 42.6
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.1e-55 221.1 293 45.4
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.3e-54 215.3 197 58.9
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 3.1e-53 213.0 331 42.3
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.6e-49 200.7 337 39.8
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.7e-46 190.7 179 58.1
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.3e-38 164.5 334 35.3
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 1.9e-34 150.6 128 60.2
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.3e-27 127.9 104 63.5
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.1e-26 124.8 90 65.6
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.6e-25 120.9 79 70.9
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.5e-23 114.4 307 30.6
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 7.3e-18 95.5 103 55.3
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.2e-17 94.7 130 45.4
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.8e-16 90.9 138 42.0
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 1.7e-14 84.3 74 66.2
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 3.7e-14 83.2 327 26.6
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.4e-14 82.4 175 38.9
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 1.9e-13 80.9 57 75.4
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.7e-11 74.3 60 55.0


User provided reference genes

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