Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.9e-111 405.2 201 100.0
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 7.2e-102 374.0 214 89.7
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 3.2e-94 348.6 213 81.2
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 5.5e-94 347.8 195 89.7
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 4.1e-89 331.6 213 78.4
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 2.5e-86 322.4 213 76.5
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 2.1e-85 319.3 213 74.6
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 3.6e-85 318.5 213 73.7
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.7e-85 318.2 213 75.6
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 6.1e-85 317.8 213 76.1
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 6.1e-85 317.8 213 73.2
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.0e-84 317.0 213 75.1
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 1.8e-84 316.2 213 73.7
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 2.3e-84 315.8 213 75.1
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 3.9e-84 315.1 213 75.6
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 3.9e-84 315.1 213 76.1
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 3.9e-84 315.1 213 73.7
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 5.2e-84 314.7 213 75.1
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 6.7e-84 314.3 213 74.6
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 8.8e-84 313.9 218 72.5
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 1.5e-83 313.2 213 72.8
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.5e-83 313.2 213 74.2
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 1.5e-83 313.2 211 75.4
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 2.0e-83 312.8 213 72.3
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 2.0e-83 312.8 213 72.8
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 2.6e-83 312.4 213 73.7
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 2.6e-83 312.4 213 73.7
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 3.3e-83 312.0 213 72.8
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 4.4e-83 311.6 213 74.2
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 5.7e-83 311.2 213 75.1
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 7.4e-83 310.8 213 73.7
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 7.4e-83 310.8 213 74.6
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 2.2e-82 309.3 213 73.2
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 2.2e-82 309.3 213 71.8
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 2.8e-82 308.9 213 71.8
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 4.8e-82 308.1 211 73.5
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 4.8e-82 308.1 213 73.2
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 4.8e-82 308.1 213 71.8
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 6.3e-82 307.8 213 71.4
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 6.3e-82 307.8 213 71.8
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.1e-81 307.0 213 73.2
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 1.4e-81 306.6 213 71.8
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 1.8e-81 306.2 213 70.9
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 2.4e-81 305.8 213 71.4
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 3.1e-81 305.4 213 72.3
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 3.1e-81 305.4 213 71.4
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 3.1e-81 305.4 213 70.4
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 4.1e-81 305.1 213 70.9
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 4.1e-81 305.1 213 72.8
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.3e-81 304.7 213 70.9
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 5.3e-81 304.7 213 71.4
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 7.0e-81 304.3 213 71.8
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 7.0e-81 304.3 213 72.3
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 7.0e-81 304.3 213 71.4
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 9.1e-81 303.9 247 66.4
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 9.1e-81 303.9 213 71.4
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 9.1e-81 303.9 213 70.4
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 9.1e-81 303.9 213 71.8
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 1.2e-80 303.5 213 71.4
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 1.2e-80 303.5 262 62.6
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.2e-80 303.5 213 71.4
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 1.6e-80 303.1 213 72.3
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 2.0e-80 302.8 213 70.4
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 2.0e-80 302.8 213 71.8
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 2.6e-80 302.4 213 70.4
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 4.5e-80 301.6 213 71.4
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 4.5e-80 301.6 250 62.0
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 7.7e-80 300.8 213 70.0
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.7e-79 299.7 206 73.8
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 1.7e-79 299.7 213 72.3
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 1.7e-79 299.7 213 71.4
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.2e-79 299.3 213 70.0
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.2e-79 299.3 213 70.0
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 2.9e-79 298.9 213 70.0
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 2.9e-79 298.9 213 70.0
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.8e-79 298.5 213 70.0
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.8e-79 298.5 213 70.0
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 6.5e-79 297.7 213 70.9
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 6.5e-79 297.7 213 70.9
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 8.5e-79 297.4 213 70.9
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.5e-78 296.6 225 69.8
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 1.9e-78 296.2 213 70.9
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.9e-78 296.2 213 70.4
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 4.2e-78 295.0 211 72.0
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 4.2e-78 295.0 234 66.2
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 5.5e-78 294.7 215 69.3
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 1.2e-77 293.5 211 69.7
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.6e-77 293.1 213 71.4
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 1.6e-77 293.1 213 68.5
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 8.0e-77 290.8 213 68.1
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 8.0e-77 290.8 213 69.0
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 1.0e-76 290.4 211 70.6
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 1.0e-76 290.4 211 70.6
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 1.4e-76 290.0 211 68.7
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 1.4e-76 290.0 211 70.6
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.8e-76 289.7 211 70.6
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.8e-76 289.7 211 68.7
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 2.3e-76 289.3 211 70.6
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 2.3e-76 289.3 211 70.6
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 2.3e-76 289.3 211 70.6
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 2.3e-76 289.3 211 70.6
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 2.3e-76 289.3 280 57.1
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 8.8e-76 287.3 211 70.6
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 8.8e-76 287.3 213 70.4
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 8.8e-76 287.3 221 67.9
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 1.5e-75 286.6 211 70.6
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 1.5e-75 286.6 211 70.6
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 1.5e-75 286.6 211 70.6
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 1.5e-75 286.6 218 66.1
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.5e-75 286.6 211 69.7
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 2.0e-75 286.2 211 70.1
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.0e-75 286.2 211 70.1
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 5.7e-75 284.6 211 69.7
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 7.5e-75 284.3 213 66.2
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 1.3e-74 283.5 211 69.7
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.3e-74 283.5 211 69.7
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 1.3e-74 283.5 211 69.7
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.7e-74 283.1 211 69.2
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 8.2e-74 280.8 287 55.7
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.4e-73 280.0 211 66.8
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.4e-73 280.0 211 66.8
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 4.1e-73 278.5 213 67.1
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 5.3e-73 278.1 199 70.4
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 1.2e-72 276.9 235 60.9
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 2.7e-69 265.8 219 62.1
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 3.6e-69 265.4 219 62.6
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.0e-68 263.8 213 69.5
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 2.3e-68 262.7 210 63.8
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 4.4e-67 258.5 213 62.4
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 2.8e-66 255.8 248 56.5
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.6e-64 250.0 211 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 1.1e-62 243.8 215 60.5
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 5.5e-62 241.5 175 70.3
RcHm_v2.0_Chr4g0412421 Rosa chinensis HOM05D003693 ORTHO05D004698 6.8e-60 234.6 143 77.6
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.7e-58 228.8 195 62.1
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 6.6e-55 218.0 158 67.1
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 8.9e-52 207.6 165 67.3
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 9.2e-49 197.6 190 55.8
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 1.9e-46 189.9 148 65.5
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.5e-46 189.5 208 51.4
AagrBONN_evm.TU.Sc2ySwM_340.50 Anthoceros agrestis HOM05D003693 ORTHO05D004698 6.2e-45 184.9 159 62.3
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 1.1e-44 184.1 213 46.0
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.3e-44 183.0 215 50.7
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 6.4e-42 174.9 233 43.8
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 2.7e-40 169.5 225 44.4
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.0e-36 155.6 90 81.1
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 9.9e-35 151.0 103 70.9
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.4e-33 147.1 178 46.6
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 1.0e-31 141.0 91 78.0
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 5.6e-30 135.2 90 70.0
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 7.3e-30 134.8 287 33.8
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.8e-29 132.9 213 40.8
Nitab4.5_0001676g0090 Nicotiana tabacum HOM05D003693 ORTHO05D021141 1.2e-24 117.5 87 67.8
MD04G1173900 Malus domestica HOM05D003693 ORTHO05D021141 8.7e-23 111.3 91 62.6
EL10As4g23424 Beta vulgaris HOM05D003693 ORTHO05D088905 1.2e-11 74.3 64 64.1
Cpa.g.c45131 Carica papaya HOM05D003693 ORTHO05D004698 4.5e-11 72.4 35 91.4
Lj3g0017821 Lotus japonicus HOM05D003693 ORTHO05D236454 7.1e-09 65.1 36 83.3
Os11g0133700 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 3.0e-07 59.7 40 67.5
Os12g0131150 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 3.0e-07 59.7 40 67.5


User provided reference genes

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