Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G2076 Ceratophyllum demersum HOM05D004711 ORTHO05D005594 8.5e-225 783.5 436 100.0
CDE06G0837 Ceratophyllum demersum HOM05D000050 ORTHO05D005594 1.5e-165 586.6 403 79.2
Dinv16951 Davidia involucrata HOM05D004711 ORTHO05D005594 7.3e-35 152.5 561 33.3
TAR636G2556 Trochodendron aralioides HOM05D004711 ORTHO05D005594 1.1e-33 148.7 564 32.6
TAR633G0481 Trochodendron aralioides HOM05D004711 ORTHO05D005594 4.0e-33 146.7 560 30.4
Oeu063842.1 Olea europaea HOM05D004711 ORTHO05D005594 8.4e-31 139.0 550 32.2
SGA_v2.0_scaffold85G26592 Striga asiatica HOM05D004711 ORTHO05D005594 1.9e-30 137.9 534 32.4
Glyma.16G220600 Glycine max HOM05D004711 ORTHO05D005594 2.4e-30 137.5 520 30.4
Nn1g01604 Nelumbo nucifera HOM05D004711 ORTHO05D005594 4.6e-29 133.3 484 33.7
Duzib151G1091 Durio zibethinus HOM05D004711 ORTHO05D005594 6.0e-29 132.9 559 30.8
Duzib268G1837 Durio zibethinus HOM05D004711 ORTHO05D005594 1.0e-28 132.1 562 31.0
MELO3C025248.2 Cucumis melo HOM05D004711 ORTHO05D005594 2.3e-28 131.0 550 33.1
Hund03689 Selenicereus undatus HOM05D004711 ORTHO05D005594 3.0e-28 130.6 552 31.9
ClCG04G006250 Citrullus lanatus HOM05D004711 ORTHO05D005594 3.9e-28 130.2 551 33.6
QL07p031674 Quercus lobata HOM05D004711 ORTHO05D005594 3.9e-28 130.2 555 32.4
Thecc.04G149100 Theobroma cacao HOM05D004711 ORTHO05D005594 3.9e-28 130.2 550 32.5
COL.COLO4_21250 Corchorus olitorius HOM05D004711 ORTHO05D005594 1.5e-27 128.3 560 30.7
Sed0008721 Sechium edule HOM05D004711 ORTHO05D005594 2.5e-27 127.5 550 33.3
CSS0021593 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 7.4e-27 125.9 558 29.7
CsaV3_4G027310 Cucumis sativus L. HOM05D004711 ORTHO05D005594 7.4e-27 125.9 557 33.8
CSS0041259 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 9.6e-27 125.6 572 30.2
Manes.09G122600 Manihot esculenta HOM05D004711 ORTHO05D005594 1.3e-26 125.2 561 32.1
Prupe.6G296400 Prunus persica HOM05D004711 ORTHO05D005594 1.6e-26 124.8 551 31.9
Actinidia32572 Actinidia chinensis HOM05D004711 ORTHO05D005594 3.7e-26 123.6 545 29.0
Oeu030100.1 Olea europaea HOM05D004711 ORTHO05D005594 1.8e-25 121.3 541 31.6
Migut.J00018 Erythranthe guttata HOM05D004711 ORTHO05D005594 2.4e-25 120.9 551 30.3
Haze_21199 Corylus avellana HOM05D004711 ORTHO05D005594 3.1e-25 120.6 547 31.8
MD12G1191700 Malus domestica HOM05D004711 ORTHO05D005594 9.0e-25 119.0 560 30.4
Hma1.2p1_0537F.1_g174195 Hydrangea macrophylla HOM05D004711 ORTHO05D005594 1.2e-24 118.6 551 32.1
Gohir.D02G106500 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.5e-24 118.2 508 29.3
Actinidia11492 Actinidia chinensis HOM05D004711 ORTHO05D005594 2.6e-24 117.5 570 29.6
Nn5g26805 Nelumbo nucifera HOM05D004711 ORTHO05D005594 3.4e-24 117.1 531 31.8
Peaxi162Scf00732g00135 Petunia axillaris HOM05D004711 ORTHO05D005594 7.6e-24 115.9 540 27.2
Glyma.18G216300 Glycine max HOM05D004711 ORTHO05D005594 2.9e-23 114.0 563 29.1
Gorai.005G121000 Gossypium raimondii HOM05D004711 ORTHO05D005594 2.9e-23 114.0 550 27.5
Cc06_g00250 Coffea canephora HOM05D004711 ORTHO05D005594 6.5e-23 112.8 552 28.8
Manes.08G169400 Manihot esculenta HOM05D004711 ORTHO05D005594 8.4e-23 112.5 550 30.4
PGSC0003DMG400002318 Solanum tuberosum HOM05D004711 ORTHO05D005594 8.4e-23 112.5 542 27.3
Cpa.g.sc72.61 Carica papaya HOM05D004711 ORTHO05D005594 1.1e-22 112.1 536 30.6
CAN.G180.2 Capsicum annuum HOM05D004711 ORTHO05D005594 1.4e-22 111.7 542 27.9
PGR004G0084 Punica granatum HOM05D004711 ORTHO05D005594 1.9e-22 111.3 569 30.2
Rhsim05G0232600 Rhododendron simsii HOM05D004711 ORTHO05D005594 1.9e-22 111.3 618 30.4
CSS0008345 Camellia sinensis var. sinensis HOM05D004711 ORTHO05D005594 4.2e-22 110.2 563 29.5
Glyma.03G001700 Glycine max HOM05D004711 ORTHO05D005594 4.2e-22 110.2 475 27.4
Lj1g0020419 Lotus japonicus HOM05D004711 ORTHO05D005594 4.2e-22 110.2 560 30.4
MSTRG.5483 Avicennia marina HOM05D004711 ORTHO05D005594 7.1e-22 109.4 540 28.1
DCAR_015327 Daucus carota HOM05D004711 ORTHO05D005594 7.1e-22 109.4 547 32.0
Sabra04G0156000 Salix brachista HOM05D004711 ORTHO05D005594 7.1e-22 109.4 626 27.8
Solyc09g031517.1 Solanum lycopersicum HOM05D004711 ORTHO05D005594 1.2e-21 108.6 541 29.2
Ciclev10011470m.g Citrus clementina HOM05D004711 ORTHO05D005594 1.6e-21 108.2 498 31.7
MD04G1176700 Malus domestica HOM05D004711 ORTHO05D005594 2.1e-21 107.8 564 31.4
Ca_07784_v3 Cicer arietinum L. HOM05D004711 ORTHO05D005594 2.7e-21 107.5 568 29.2
Sed0027783 Sechium edule HOM05D004711 ORTHO05D005594 3.5e-21 107.1 551 30.9
Nn2g10244 Nelumbo nucifera HOM05D004711 ORTHO05D005594 4.6e-21 106.7 553 29.5
PSO017G6473 Papaver somniferum HOM05D004711 ORTHO05D005594 4.6e-21 106.7 275 34.9
Phvul.010G058700 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 4.6e-21 106.7 503 32.4
Sopen09g013790 Solanum pennellii HOM05D004711 ORTHO05D005594 4.6e-21 106.7 542 28.8
Glyma.09G272800 Glycine max HOM05D004711 ORTHO05D005594 6.0e-21 106.3 565 28.1
A05p40110 Brassica napus HOM05D004711 ORTHO05D005594 1.0e-20 105.5 558 30.5
arahy.Tifrunner.gnm1.ann1.C9I5IG Arachis hypogaea HOM05D004711 ORTHO05D005594 2.3e-20 104.4 575 31.3
TPR.G24318 Trifolium pratense HOM05D004711 ORTHO05D005594 2.3e-20 104.4 566 29.9
VMungo0331G0284 Vigna mungo HOM05D004711 ORTHO05D005594 3.9e-20 103.6 490 33.3
HanXRQChr10g0287631 Helianthus annuus HOM05D004711 ORTHO05D005594 5.1e-20 103.2 575 30.4
HanXRQChr01g0000511 Helianthus annuus HOM05D004711 ORTHO05D005594 6.7e-20 102.8 516 29.7
Ah.15g089840 Amaranthus hybridus HOM05D004711 ORTHO05D005594 1.1e-19 102.1 546 31.5
Lsat_1_v5_gn_9_39741 Lactuca sativa HOM05D004711 ORTHO05D005594 1.1e-19 102.1 557 28.2
arahy.Tifrunner.gnm1.ann1.QFH4DU Arachis hypogaea HOM05D004711 ORTHO05D005594 1.5e-19 101.7 575 29.9
Gohir.D02G002600 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.5e-19 101.7 569 29.3
Gorai.005G003100 Gossypium raimondii HOM05D004711 ORTHO05D005594 1.5e-19 101.7 569 30.6
Gohir.A03G087100 Gossypium hirsutum HOM05D004711 ORTHO05D005594 2.5e-19 100.9 553 27.7
Phvul.008G080400 Phaseolus vulgaris HOM05D004711 ORTHO05D005594 4.3e-19 100.1 561 29.4
Oeu026938.1 Olea europaea HOM05D004711 ORTHO05D005594 5.7e-19 99.8 530 30.0
Aqoxy4G03297 Aquilegia oxysepala HOM05D004711 ORTHO05D005594 9.6e-19 99.0 554 29.1
Potri.006G110700 Populus trichocarpa HOM05D004711 ORTHO05D005594 9.6e-19 99.0 568 30.1
GSVIVG01029882001 Vitis vinifera HOM05D004711 ORTHO05D005594 1.6e-18 98.2 265 35.5
FvH4_6g09520 Fragaria vesca HOM05D004711 ORTHO05D005594 3.7e-18 97.1 555 28.6
FAN14G5267 Fragaria x ananassa HOM05D004711 ORTHO05D005594 4.8e-18 96.7 555 28.5
FAN02G0291 Fragaria x ananassa HOM05D004711 ORTHO05D005594 6.3e-18 96.3 558 28.0
Gohir.A02G002300 Gossypium hirsutum HOM05D004711 ORTHO05D005594 1.1e-17 95.5 569 30.1
Potri.016G139500 Populus trichocarpa HOM05D004711 ORTHO05D005594 1.1e-17 95.5 558 30.6
TWI74G1298 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 1.4e-17 95.1 565 29.7
RcHm_v2.0_Chr3g0460111 Rosa chinensis HOM05D004711 ORTHO05D005594 2.4e-17 94.4 551 27.8
Carub.0003s0780 Capsella rubella HOM05D004711 ORTHO05D005594 3.1e-17 94.0 552 29.3
Sc20g0007170 Simmondsia chinensis HOM05D004711 ORTHO05D005594 4.1e-17 93.6 547 28.0
VMungo1383G3052 Vigna mungo HOM05D004711 ORTHO05D005594 4.1e-17 93.6 558 27.4
ECA247G0260 Erigeron canadensis HOM05D004711 ORTHO05D005594 1.5e-16 91.7 519 30.6
Actinidia29018 Actinidia chinensis HOM05D004711 ORTHO05D005594 2.0e-16 91.3 276 33.0
FAN09G1198 Fragaria x ananassa HOM05D004711 ORTHO05D005594 2.0e-16 91.3 532 28.8
Nitab4.5_0000048g0270 Nicotiana tabacum HOM05D004711 ORTHO05D005594 3.4e-16 90.5 441 27.2
PSO384G0846 Papaver somniferum HOM05D004711 ORTHO05D005594 5.9e-16 89.7 549 29.0
BolC3t16673H Brassica oleracea HOM05D004711 ORTHO05D005594 7.6e-16 89.4 528 29.4
Eucgr.K01295 Eucalyptus grandis HOM05D004711 ORTHO05D005594 7.6e-16 89.4 572 28.1
FAN05G2346 Fragaria x ananassa HOM05D004711 ORTHO05D005594 1.0e-15 89.0 551 27.9
C05p59190 Brassica napus HOM05D004711 ORTHO05D005594 2.2e-15 87.8 563 29.5
BcaC05g29601 Brassica carinata HOM05D004711 ORTHO05D005594 2.9e-15 87.4 563 29.5
BolC5t34578H Brassica oleracea HOM05D004711 ORTHO05D005594 5.0e-15 86.7 563 29.5
PSO339G1855 Papaver somniferum HOM05D004711 ORTHO05D005594 6.5e-15 86.3 550 28.4
Nitab4.5_0001876g0050 Nicotiana tabacum HOM05D004711 ORTHO05D005594 1.1e-14 85.5 446 27.4
unitig_22.g6618 Utricularia gibba HOM05D004711 ORTHO05D005594 1.1e-14 85.5 528 30.5
BcaB04g18575 Brassica carinata HOM05D004711 ORTHO05D005594 1.4e-14 85.1 540 26.9
PSO170G0854 Papaver somniferum HOM05D004711 ORTHO05D005594 1.4e-14 85.1 539 29.1
Lj3A939T103 Lonicera japonica HOM05D004711 ORTHO05D005594 1.9e-14 84.7 499 31.3
Sabra06G0086000 Salix brachista HOM05D004711 ORTHO05D005594 1.9e-14 84.7 602 30.1
BraA03t12809Z Brassica rapa HOM05D004711 ORTHO05D005594 3.2e-14 84.0 529 29.5
AUR62029794 Chenopodium quinoa HOM05D004711 ORTHO05D005594 3.2e-14 84.0 282 30.1
Dinv25360 Davidia involucrata HOM05D004711 ORTHO05D005594 3.2e-14 84.0 138 39.1
Aa31LG5G18710 Aethionema arabicum HOM05D004711 ORTHO05D005594 5.5e-14 83.2 568 26.6
C03p44020 Brassica napus HOM05D004711 ORTHO05D005594 7.2e-14 82.8 527 30.2
CARHR082970 Cardamine hirsuta HOM05D004711 ORTHO05D005594 9.3e-14 82.4 566 30.0
Lj2C57T4 Lonicera japonica HOM05D004711 ORTHO05D005594 1.2e-13 82.0 497 30.8
TWI53G0370 Tripterygium wilfordii HOM05D004711 ORTHO05D005594 1.2e-13 82.0 270 33.3
A03p36410 Brassica napus HOM05D004711 ORTHO05D005594 2.1e-13 81.3 525 30.5
BcaC05g29602 Brassica carinata HOM05D004711 ORTHO05D005594 2.7e-13 80.9 551 29.8
AUR62006439 Chenopodium quinoa HOM05D004711 ORTHO05D005594 2.7e-13 80.9 543 27.8
EL10Ac7g17131 Beta vulgaris HOM05D004711 ORTHO05D005594 1.8e-12 78.2 586 26.6
THA.LOC104816161 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 2.3e-12 77.8 542 27.9
THA.LOC104816162 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 2.3e-12 77.8 542 27.9
THA.LOC104816163 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 2.3e-12 77.8 542 27.9
Thhalv10020404m.g Eutrema salsugineum HOM05D004711 ORTHO05D005594 3.0e-12 77.4 559 29.3
AT3G08670 Arabidopsis thaliana HOM05D004711 ORTHO05D005594 6.7e-12 76.3 568 26.9
Sp3g07110 Schrenkiella parvula HOM05D004711 ORTHO05D005594 1.1e-11 75.5 565 29.0
AL3G19670 Arabidopsis lyrata HOM05D004711 ORTHO05D005594 2.5e-11 74.3 558 26.0
vmacro20387 Vaccinium macrocarpon HOM05D004711 ORTHO05D005594 4.3e-11 73.6 91 44.0
Medtr7g073720 Medicago truncatula HOM05D004711 ORTHO05D005594 5.7e-11 73.2 565 27.6
Zm00001eb368960 Zea mays HOM05D004711 ORTHO05D005594 7.4e-11 72.8 273 30.0
Atru.chr8.78 Acer truncatum HOM05D004711 ORTHO05D005594 1.3e-10 72.0 566 28.4
Zm00001eb290760 Zea mays HOM05D004711 ORTHO05D005594 6.3e-10 69.7 304 28.6
BcaC01g04190 Brassica carinata HOM05D004711 ORTHO05D005594 8.2e-10 69.3 529 28.5
THA.LOC104823329 Tarenaya hassleriana HOM05D004711 ORTHO05D005594 1.8e-09 68.2 542 26.4
Zm00001eb352090 Zea mays HOM05D004711 ORTHO05D005594 1.8e-09 68.2 284 28.2
HPP92_019048 Vanilla planifolia HOM05D004711 ORTHO05D005594 6.9e-09 66.2 532 25.0
SalBow5G3438 Salvia bowleyana HOM05D004711 ORTHO05D005594 1.2e-08 65.5 163 35.0
Os01g0819000 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 3.4e-08 63.9 268 28.7
ATR1127G195 Amborella trichopoda HOM05D004711 ORTHO05D005594 5.9e-08 63.2 308 30.8
Oeu013178.3 Olea europaea HOM05D004711 ORTHO05D005594 5.9e-08 63.2 390 28.2
TAR636G1452 Trochodendron aralioides HOM05D004711 ORTHO05D005594 1.7e-07 61.6 52 53.8
CDE04G1233 Ceratophyllum demersum HOM05D004711 ORTHO05D005594 3.8e-07 60.5 422 24.9
Lalb_Chr01g0023911 Lupinus albus HOM05D004711 ORTHO05D005594 6.5e-07 59.7 287 28.6
vmacro20386 Vaccinium macrocarpon HOM05D004711 ORTHO05D005594 6.5e-07 59.7 157 35.0
Gohir.D04G067400 Gossypium hirsutum HOM05D001930 ORTHO05D001345 8.5e-07 59.3 107 41.1
Gorai.012G076400 Gossypium raimondii HOM05D001930 ORTHO05D001345 8.5e-07 59.3 107 41.1
Os05g0480600 Oryza sativa ssp. japonica HOM05D004711 ORTHO05D005594 1.1e-06 58.9 284 27.1
Potri.016G114900 Populus trichocarpa HOM05D001930 ORTHO05D001345 1.1e-06 58.9 123 35.8
PGSC0003DMG400008491 Solanum tuberosum HOM05D001930 ORTHO05D001345 1.4e-06 58.5 99 42.4
Nitab4.5_0005776g0030 Nicotiana tabacum HOM05D001930 ORTHO05D001345 1.9e-06 58.2 92 41.3
AUR62012234 Chenopodium quinoa HOM05D001930 ORTHO05D001345 2.5e-06 57.8 108 40.7
Nitab4.5_0000335g0170 Nicotiana tabacum HOM05D001930 ORTHO05D001345 2.5e-06 57.8 92 41.3
Actinidia00940 Actinidia chinensis HOM05D001930 ORTHO05D001345 5.5e-06 56.6 119 41.2
BcaB02g09057 Brassica carinata HOM05D001930 ORTHO05D001345 5.5e-06 56.6 111 40.5
Gohir.A05G329400 Gossypium hirsutum HOM05D001930 ORTHO05D001345 5.5e-06 56.6 107 40.2
MBI14_g28262_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 7.2e-06 56.2 117 37.6
Psat3g118000 Pisum sativum HOM05D004711 ORTHO05D005594 7.2e-06 56.2 402 29.9
Hund13843 Selenicereus undatus HOM05D001930 ORTHO05D001345 7.2e-06 56.2 112 38.4
Sc10g0002280 Simmondsia chinensis HOM05D001930 ORTHO05D001345 9.4e-06 55.8 104 39.4


User provided reference genes

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