Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.2e-92 343.2 181 100.0
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.7e-65 253.1 179 71.5
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 2.8e-65 252.3 180 70.6
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 6.3e-65 251.1 177 71.2
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.1e-64 250.4 179 70.9
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 2.4e-64 249.2 179 70.9
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 7.0e-64 247.7 180 71.7
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.6e-63 246.5 179 69.8
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 2.0e-63 246.1 177 71.8
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 2.0e-63 246.1 179 69.8
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 3.5e-63 245.4 179 69.8
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 5.9e-63 244.6 180 71.7
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.7e-63 244.2 177 69.5
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 1.3e-62 243.4 180 70.0
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.7e-62 243.0 180 68.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.2e-62 242.7 181 69.6
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.2e-62 242.7 179 70.9
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 2.9e-62 242.3 179 70.4
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 5.0e-62 241.5 180 68.3
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.5e-61 240.0 179 68.2
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.5e-61 240.0 179 70.4
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 1.9e-61 239.6 179 69.3
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 2.5e-61 239.2 179 72.1
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 2.5e-61 239.2 179 68.7
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 2.5e-61 239.2 179 70.4
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 2.5e-61 239.2 179 70.4
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 2.5e-61 239.2 179 69.3
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 3.2e-61 238.8 179 69.3
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 5.5e-61 238.0 179 69.8
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 7.2e-61 237.7 179 67.0
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 9.4e-61 237.3 179 70.4
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 1.2e-60 236.9 179 68.7
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.2e-60 236.9 189 66.7
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.7e-60 235.7 179 69.8
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 2.7e-60 235.7 177 71.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 3.6e-60 235.3 179 65.9
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 4.7e-60 235.0 179 69.3
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 6.1e-60 234.6 179 65.9
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 1.4e-59 233.4 179 65.9
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.8e-59 233.0 180 67.2
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 1.8e-59 233.0 179 68.2
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 4.0e-59 231.9 179 65.9
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 4.0e-59 231.9 179 65.4
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 5.2e-59 231.5 180 66.7
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 5.2e-59 231.5 179 64.8
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 6.7e-59 231.1 177 66.7
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.2e-58 230.3 177 65.5
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 2.0e-58 229.6 179 65.9
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 4.4e-58 228.4 185 66.5
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.4e-58 228.4 179 64.2
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 7.5e-58 227.6 179 65.4
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 9.7e-58 227.3 179 66.5
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.3e-57 226.9 185 65.9
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.3e-57 226.9 179 65.9
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.7e-57 226.5 177 68.4
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 2.2e-57 226.1 177 65.0
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 3.7e-57 225.3 181 65.7
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 4.8e-57 224.9 179 64.8
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.8e-57 224.9 179 64.2
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 8.3e-57 224.2 146 78.1
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.1e-56 223.8 179 63.1
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.4e-56 223.4 177 67.8
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 4.1e-56 221.9 185 65.9
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 4.1e-56 221.9 177 64.4
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 4.1e-56 221.9 180 63.3
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 4.1e-56 221.9 179 64.2
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 7.0e-56 221.1 177 63.8
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 7.0e-56 221.1 179 67.0
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 9.1e-56 220.7 179 63.7
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.2e-55 220.3 180 63.3
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 2.0e-55 219.5 181 63.5
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.0e-55 219.5 179 62.0
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 2.7e-55 219.2 166 66.3
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 4.5e-55 218.4 179 63.1
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 5.9e-55 218.0 181 62.4
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 5.9e-55 218.0 162 67.3
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.3e-54 216.9 181 63.5
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.9e-54 215.7 203 58.1
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 3.8e-54 215.3 180 63.3
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 5.0e-54 214.9 180 63.9
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 6.5e-54 214.5 179 60.3
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 6.5e-54 214.5 179 61.5
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 8.5e-54 214.2 180 63.9
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 8.5e-54 214.2 179 61.5
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 8.5e-54 214.2 179 61.5
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.5e-53 213.4 179 60.9
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.9e-53 213.0 180 62.8
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.9e-53 213.0 180 63.9
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.9e-53 213.0 179 61.5
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 2.5e-53 212.6 180 63.3
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 2.5e-53 212.6 198 60.6
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.2e-53 212.2 180 63.3
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 7.2e-53 211.1 180 62.8
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 7.2e-53 211.1 180 62.8
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 7.2e-53 211.1 180 66.7
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 9.4e-53 210.7 179 61.5
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 2.7e-52 209.1 138 76.8
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.7e-52 209.1 202 56.4
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 6.1e-52 208.0 180 62.2
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 6.1e-52 208.0 180 58.9
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.0e-51 207.2 160 63.8
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.4e-51 206.8 180 61.7
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 2.3e-51 206.1 180 64.4
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.3e-51 206.1 141 75.9
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 4.0e-51 205.3 179 58.1
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 5.2e-51 204.9 148 71.6
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 6.8e-51 204.5 180 60.0
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 8.8e-51 204.1 179 58.7
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 5.7e-50 201.4 185 59.5
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 7.5e-50 201.1 210 51.9
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.2e-49 199.5 179 60.3
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.7e-46 189.9 180 55.6
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 2.3e-46 189.5 138 68.8
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.9e-45 186.4 137 70.8
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 3.3e-45 185.7 180 54.4
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 1.4e-43 180.3 116 76.7
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.0e-42 176.4 169 56.8
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.4e-42 175.3 179 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 2.8e-41 172.6 181 53.0
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 1.8e-40 169.9 110 78.2
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 4.1e-40 168.7 178 54.5
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 5.0e-38 161.8 89 95.5
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.6e-38 161.4 154 53.2
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.6e-38 161.4 154 53.2
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 5.8e-34 148.3 161 55.3
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.1e-32 144.1 188 44.1
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 8.6e-30 134.4 176 48.3
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.1e-29 134.0 70 100.0
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.5e-29 133.7 113 58.4
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.9e-29 133.3 113 57.5
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 9.5e-29 131.0 114 57.9
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 9.5e-29 131.0 176 44.9
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 9.5e-29 131.0 93 68.8
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.6e-28 130.2 122 55.7
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 8.9e-27 124.4 148 48.0
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.6e-23 113.6 122 53.3
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 7.8e-23 111.3 110 55.5
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.3e-22 110.5 118 50.8
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.3e-22 109.8 99 57.6
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.2e-20 104.0 151 42.4
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 4.4e-18 95.5 71 62.0
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 7.1e-16 88.2 63 65.1
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.6e-15 85.5 94 55.3
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 6.0e-15 85.1 89 51.7
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.7e-14 83.6 125 43.2
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.9e-14 82.4 54 79.6
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 3.6e-12 75.9 58 65.5
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 6.2e-12 75.1 124 37.1
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 4.9e-09 65.5 87 43.7
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 6.4e-09 65.1 38 71.1
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.1e-08 64.3 92 38.0
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.9e-08 63.5 61 47.5
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 1.6e-07 60.5 41 65.9


User provided reference genes

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