Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.7e-247 857.8 460 100.0
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 6.0e-221 770.8 440 95.7
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.7e-135 486.9 441 58.5
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 4.3e-134 482.3 445 64.7
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.2e-131 474.2 430 65.1
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 2.0e-131 473.4 445 57.5
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.4e-131 472.2 446 56.3
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 7.5e-131 471.5 443 56.2
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 4.9e-130 468.8 441 64.2
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 6.4e-130 468.4 449 54.8
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 2.7e-128 463.0 444 55.4
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.3e-127 460.7 444 54.5
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.3e-127 460.7 452 60.0
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.0e-127 459.5 447 54.8
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.5e-126 457.2 445 61.8
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 5.6e-126 455.3 443 54.4
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 5.6e-126 455.3 445 59.6
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.1e-124 451.1 446 61.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 1.4e-124 450.7 462 53.7
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 5.2e-124 448.7 447 54.4
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.5e-123 447.2 434 55.3
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 3.4e-123 446.0 443 58.9
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.4e-123 446.0 441 58.3
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 5.8e-123 445.3 436 58.5
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.7e-122 443.7 448 54.7
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 2.2e-122 443.4 443 53.7
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.9e-122 443.0 443 58.5
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 8.4e-122 441.4 448 54.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.1e-121 441.0 440 60.0
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.1e-121 441.0 454 53.5
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.9e-121 440.3 439 54.0
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.2e-121 439.5 439 57.9
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 3.2e-121 439.5 451 51.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.1e-121 439.1 453 53.9
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 7.1e-121 438.3 448 58.3
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 7.1e-121 438.3 459 52.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 9.2e-121 438.0 441 52.8
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.6e-120 437.2 459 52.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.6e-120 437.2 446 53.6
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 3.5e-120 436.0 452 58.0
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.3e-119 433.3 442 58.8
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 3.0e-119 433.0 447 52.3
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 3.9e-119 432.6 446 51.3
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 5.1e-119 432.2 445 51.7
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 9.6e-118 427.9 448 52.5
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 9.6e-118 427.9 448 51.6
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 4.7e-117 425.6 447 51.9
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 6.2e-117 425.2 445 57.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 6.2e-117 425.2 448 57.8
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.1e-116 424.5 443 56.9
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.4e-116 423.3 448 50.9
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 3.1e-116 422.9 445 51.0
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 4.0e-116 422.5 452 50.9
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.5e-115 420.6 448 51.6
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.6e-115 419.9 444 50.7
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 3.4e-115 419.5 448 51.8
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 4.4e-115 419.1 447 56.4
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 5.8e-115 418.7 443 49.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.8e-115 418.7 445 58.2
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 7.6e-115 418.3 445 58.2
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.4e-113 413.3 452 56.6
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.2e-113 412.5 448 51.3
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.1e-113 411.8 449 57.0
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.2e-112 411.0 446 50.4
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.2e-112 411.0 447 52.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.1e-112 410.2 461 53.8
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.1e-112 410.2 447 57.3
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 3.5e-112 409.5 444 49.3
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 4.6e-112 409.1 452 51.5
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 6.0e-112 408.7 449 55.5
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 3.0e-111 406.4 440 49.3
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 3.0e-111 406.4 431 49.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 3.9e-111 406.0 442 48.6
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.9e-111 406.0 447 49.7
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 5.1e-111 405.6 441 48.5
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 8.7e-111 404.8 447 49.7
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.1e-110 404.4 442 48.6
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.6e-110 401.4 450 48.7
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 9.6e-110 401.4 448 49.3
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 2.1e-109 400.2 448 48.7
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.0e-108 396.0 446 49.3
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 5.3e-108 395.6 442 48.0
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.9e-108 395.2 448 48.7
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 2.0e-107 393.7 451 54.3
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 3.4e-107 392.9 429 56.4
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 4.5e-107 392.5 450 49.1
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 5.8e-107 392.1 443 48.1
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 5.8e-107 392.1 427 48.9
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 5.8e-107 392.1 465 48.2
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.9e-106 389.8 474 44.9
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 3.8e-106 389.4 427 48.5
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 6.4e-106 388.7 426 48.6
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.5e-104 382.9 432 48.1
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 3.9e-103 379.4 447 47.9
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 8.7e-103 378.3 472 46.2
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.3e-101 374.4 431 55.7
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 2.8e-101 373.2 507 41.8
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-98 364.4 473 43.8
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.1e-96 357.1 435 48.0
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 8.2e-93 345.1 449 48.1
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 5.3e-92 342.4 440 41.8
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 4.9e-90 335.9 423 43.3
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 7.1e-89 332.0 546 37.0
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.8e-87 327.4 427 49.6
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 2.3e-87 327.0 445 49.0
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 3.3e-86 323.2 436 42.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.1e-85 320.5 441 49.2
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.4e-84 317.0 441 41.7
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 9.0e-84 315.1 472 40.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.0e-66 258.5 463 37.8
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 8.2e-53 212.2 205 57.1
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.7e-46 189.5 239 45.2
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.8e-46 188.7 196 51.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.8e-46 188.7 238 45.4
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.8e-46 188.7 238 45.4
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.8e-44 184.5 249 43.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.1e-44 183.3 245 43.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 4.5e-43 179.9 215 47.4
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.5e-41 172.2 198 46.0
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-37 161.4 240 41.7
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.9e-37 159.8 160 51.2
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.6e-32 144.8 162 51.2
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 8.0e-32 142.5 98 68.4
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.0e-31 140.6 132 53.0
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.8e-31 139.4 202 39.6
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.8e-30 136.3 202 40.6
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.9e-29 134.0 204 37.7
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 7.8e-27 125.9 423 26.5
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 2.3e-26 124.4 147 45.6
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.9e-25 121.3 419 24.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.5e-25 119.0 239 33.9
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.2e-24 118.6 89 65.2
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.8e-24 117.5 266 32.0
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 3.1e-23 114.0 105 51.4
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 7.5e-22 109.4 87 56.3
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 4.9e-21 106.7 373 24.7
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.7e-18 98.2 130 40.0
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 3.0e-18 97.4 145 38.6
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 5.6e-17 93.2 423 23.2
CDE04G1519 Ceratophyllum demersum HOM05D003295 ORTHO05D004003 1.7e-10 71.6 104 50.0
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 5.6e-09 66.6 96 41.7
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 4.0e-07 60.5 345 20.3


User provided reference genes

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