Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 7.8e-32 139.8 69 100.0
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 7.8e-32 139.8 69 100.0
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.5e-30 135.6 68 97.1
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.5e-30 135.6 68 97.1
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.5e-30 135.6 68 97.1
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 4.3e-30 134.0 69 95.7
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 7.3e-30 133.3 67 97.0
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 9.5e-30 132.9 67 97.0
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 9.5e-30 132.9 67 97.0
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 9.5e-30 132.9 67 97.0
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 9.5e-30 132.9 67 97.0
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 9.5e-30 132.9 68 95.6
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 9.5e-30 132.9 67 97.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 9.5e-30 132.9 67 97.0
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.6e-29 132.1 69 92.8
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.6e-29 132.1 68 92.6
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.8e-29 131.3 67 94.0
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.8e-29 131.3 67 94.0
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 2.8e-29 131.3 67 95.5
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 2.8e-29 131.3 68 91.2
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 4.7e-29 130.6 67 94.0
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 4.7e-29 130.6 67 94.0
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 6.2e-29 130.2 67 92.5
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 6.2e-29 130.2 67 94.0
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 6.2e-29 130.2 67 94.0
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 6.2e-29 130.2 67 94.0
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 6.2e-29 130.2 67 94.0
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 6.2e-29 130.2 67 94.0
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 6.2e-29 130.2 67 94.0
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 8.1e-29 129.8 67 94.0
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 8.1e-29 129.8 67 94.0
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 8.1e-29 129.8 67 92.5
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.1e-28 129.4 68 91.2
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 1.1e-28 129.4 67 92.5
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.1e-28 129.4 69 92.8
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.1e-28 129.4 67 92.5
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.1e-28 129.4 67 92.5
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 1.1e-28 129.4 65 96.9
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.1e-28 129.4 67 92.5
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.4e-28 129.0 67 92.5
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.4e-28 129.0 67 92.5
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.4e-28 129.0 68 89.7
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 1.8e-28 128.6 67 92.5
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 3.1e-28 127.9 67 92.5
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 3.1e-28 127.9 67 91.0
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 3.1e-28 127.9 69 89.9
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 3.1e-28 127.9 68 88.2
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 3.1e-28 127.9 67 91.0
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 4.0e-28 127.5 67 91.0
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 4.0e-28 127.5 66 93.9
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 4.0e-28 127.5 67 91.0
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.0e-28 127.5 67 91.0
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 5.2e-28 127.1 67 91.0
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 5.2e-28 127.1 67 89.6
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 5.2e-28 127.1 67 89.6
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 6.8e-28 126.7 67 91.0
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 6.8e-28 126.7 67 89.6
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.8e-28 126.7 67 89.6
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.8e-28 126.7 67 89.6
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.8e-28 126.7 67 89.6
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 6.8e-28 126.7 67 88.1
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 6.8e-28 126.7 67 89.6
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 8.9e-28 126.3 68 86.8
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 8.9e-28 126.3 66 92.4
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 8.9e-28 126.3 67 89.6
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.2e-27 125.9 69 88.4
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.2e-27 125.9 69 88.4
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 1.2e-27 125.9 67 89.6
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.5e-27 125.6 69 88.4
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 1.5e-27 125.6 69 88.4
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.0e-27 125.2 67 89.6
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 2.0e-27 125.2 69 85.5
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 2.6e-27 124.8 67 88.1
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 2.6e-27 124.8 67 89.6
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.6e-27 124.8 68 85.3
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.6e-27 124.8 68 85.3
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.4e-27 124.0 67 88.1
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 7.6e-27 123.2 67 86.6
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 7.6e-27 123.2 67 86.6
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 9.9e-27 122.9 67 85.1
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.3e-26 122.5 67 83.6
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.3e-26 122.5 67 83.6
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 2.2e-26 121.7 67 83.6
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 4.9e-26 120.6 66 86.4
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 6.4e-26 120.2 67 80.6
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 6.4e-26 120.2 67 80.6
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 6.4e-26 120.2 68 79.4
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.1e-25 119.4 67 80.6
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.2e-25 117.9 68 82.4
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 4.1e-25 117.5 69 79.7
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 2.1e-24 115.2 67 77.6
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 4.6e-24 114.0 64 81.2
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 4.6e-24 114.0 67 76.1
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 6.0e-24 113.6 61 90.2
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 6.0e-24 113.6 61 90.2
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.0e-23 112.8 67 74.6
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 5.1e-23 110.5 68 75.0
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 1.1e-22 109.4 65 78.5
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.9e-22 108.6 63 76.2
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.4e-20 102.4 51 98.0
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.4e-20 102.4 51 98.0
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 3.1e-20 101.3 57 86.0
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 2.6e-19 98.2 57 80.7
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 4.4e-19 97.4 52 86.5
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 4.4e-19 97.4 50 92.0
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.2e-18 95.1 61 73.8
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 8.4e-18 93.2 51 84.3
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 8.4e-18 93.2 51 84.3
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 4.2e-17 90.9 66 56.1
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 9.3e-17 89.7 67 58.2
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.6e-16 89.0 67 73.1
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 2.7e-16 88.2 50 78.0
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 1.7e-15 85.5 87 51.7
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.3e-15 85.1 54 81.5
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.3e-15 85.1 55 69.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.6e-14 80.5 50 72.0
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.9e-10 68.2 34 97.1
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 4.9e-10 67.4 34 97.1
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 2.1e-08 62.0 51 64.7
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 3.5e-08 61.2 34 76.5
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 1.8e-07 58.9 39 82.1


User provided reference genes

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