Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.2e-69 265.4 123 100.0
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 4.1e-68 261.2 123 96.7
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.2e-61 238.8 126 87.3
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.4e-60 236.1 126 84.9
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 7.1e-60 233.8 126 83.3
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 9.2e-60 233.4 126 83.3
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.2e-59 233.0 126 83.3
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 1.2e-59 233.0 126 82.5
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 83.3
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 82.5
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 82.5
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 82.5
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 83.3
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.6e-59 232.6 126 84.1
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.1e-59 232.3 126 82.5
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.7e-59 231.9 126 82.5
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.7e-59 231.9 126 82.5
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.7e-59 231.9 126 82.5
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 2.7e-59 231.9 126 83.3
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 2.7e-59 231.9 126 82.5
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 3.5e-59 231.5 126 82.5
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.5e-59 231.5 126 82.5
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 3.5e-59 231.5 126 82.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.5e-59 231.5 126 83.3
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 3.5e-59 231.5 126 83.3
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 4.6e-59 231.1 126 83.3
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 4.6e-59 231.1 126 81.7
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 4.6e-59 231.1 126 81.7
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 4.6e-59 231.1 126 81.7
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.6e-59 231.1 126 82.5
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 6.0e-59 230.7 126 82.5
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 6.0e-59 230.7 126 81.7
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 6.0e-59 230.7 126 82.5
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 6.0e-59 230.7 126 81.7
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 6.0e-59 230.7 126 81.7
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 6.0e-59 230.7 126 81.7
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.0e-58 229.9 126 81.7
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.0e-58 229.9 126 82.5
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.0e-58 229.9 126 82.5
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.3e-58 229.6 126 81.7
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.3e-58 229.6 126 81.0
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.3e-58 229.6 126 81.0
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.7e-58 229.2 124 83.9
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 2.3e-58 228.8 126 81.0
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.0e-58 228.4 126 81.0
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.0e-58 228.4 126 81.0
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.0e-58 228.4 126 81.0
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.9e-58 228.0 126 81.0
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 5.1e-58 227.6 126 81.0
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 5.1e-58 227.6 126 81.0
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.6e-58 227.3 126 80.2
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.6e-58 227.3 126 80.2
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 8.7e-58 226.9 126 80.2
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.7e-58 226.9 126 80.2
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 8.7e-58 226.9 126 80.2
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 8.7e-58 226.9 126 81.0
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 8.7e-58 226.9 126 80.2
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.1e-57 226.5 126 80.2
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.1e-57 226.5 126 80.2
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.1e-57 226.5 126 80.2
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 1.5e-57 226.1 126 80.2
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 1.5e-57 226.1 121 81.0
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.9e-57 225.7 126 79.4
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 1.9e-57 225.7 126 80.2
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 2.5e-57 225.3 124 80.6
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 2.5e-57 225.3 124 80.6
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.5e-57 225.3 126 79.4
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 2.5e-57 225.3 126 80.2
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 2.5e-57 225.3 126 80.2
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 2.5e-57 225.3 126 80.2
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 2.5e-57 225.3 126 80.2
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.5e-57 225.3 125 80.8
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 3.3e-57 224.9 124 81.5
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 4.3e-57 224.6 128 77.3
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 4.3e-57 224.6 126 79.4
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 5.6e-57 224.2 126 78.6
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 5.6e-57 224.2 126 78.6
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.3e-57 223.8 126 79.4
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.2e-56 223.0 123 80.5
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.2e-56 223.0 126 79.4
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 2.1e-56 222.2 124 79.8
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 2.1e-56 222.2 126 77.8
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 2.1e-56 222.2 126 77.8
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.1e-56 222.2 126 77.8
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.1e-56 222.2 124 79.8
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 2.8e-56 221.9 124 81.5
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 3.6e-56 221.5 126 77.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 3.6e-56 221.5 125 78.4
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 8.1e-56 220.3 126 77.8
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 8.1e-56 220.3 126 77.8
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.8e-55 219.2 124 79.8
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.8e-55 219.2 124 79.8
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 2.4e-55 218.8 126 77.8
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 4.0e-55 218.0 124 79.0
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 4.0e-55 218.0 125 77.6
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.0e-55 218.0 125 77.6
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.0e-55 218.0 125 77.6
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 4.0e-55 218.0 126 77.0
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 4.0e-55 218.0 126 77.0
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 6.9e-55 217.2 124 79.0
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 6.9e-55 217.2 124 79.0
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.9e-55 217.2 124 76.6
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.9e-55 217.2 124 76.6
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 6.9e-55 217.2 124 79.0
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.0e-55 216.9 124 76.6
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-54 216.5 125 76.8
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 2.0e-54 215.7 124 79.8
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 2.6e-54 215.3 126 76.2
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 4.4e-54 214.5 121 76.9
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 5.8e-54 214.2 124 78.2
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 7.6e-54 213.8 124 78.2
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 7.6e-54 213.8 124 78.2
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 7.6e-54 213.8 124 78.2
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 7.6e-54 213.8 124 78.2
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 7.6e-54 213.8 124 78.2
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 9.9e-54 213.4 151 67.5
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.3e-53 213.0 124 78.2
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.7e-53 212.6 124 78.2
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 2.2e-53 212.2 121 80.2
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 6.4e-53 210.7 171 61.4
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 8.4e-53 210.3 120 79.2
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.1e-52 209.9 123 77.2
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.1e-52 209.9 118 81.4
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.1e-52 209.9 118 81.4
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 1.4e-52 209.5 118 80.5
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 2.4e-52 208.8 112 82.1
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 4.2e-52 208.0 132 73.5
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 9.3e-52 206.8 126 73.8
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.6e-51 206.1 157 63.7
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 2.1e-51 205.7 126 71.4
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 3.5e-51 204.9 117 82.9
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 9.6e-49 196.8 109 82.6
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.1e-48 195.7 114 77.2
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 8.1e-48 193.7 112 79.5
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.4e-47 192.2 108 81.5
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.5e-41 172.2 140 60.7
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 3.7e-40 168.3 94 77.7
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.8e-39 166.0 87 83.9
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.5e-38 162.9 85 83.5
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 2.6e-38 162.2 124 63.7
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 4.5e-38 161.4 82 86.6
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.3e-37 159.8 82 86.6
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.7e-37 159.5 82 85.4
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 4.9e-37 157.9 100 75.0
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 4.9e-37 157.9 82 85.4
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.4e-36 156.4 131 58.8
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.2e-36 155.2 82 82.9
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 5.5e-36 154.5 76 89.5
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.2e-35 153.3 83 81.9
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 3.9e-34 148.3 110 65.5
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.3e-33 144.8 126 56.3
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 7.4e-33 144.1 78 84.6
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-29 133.3 177 42.4
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.3e-29 133.3 78 76.9
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.3e-29 133.3 120 55.8
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.9e-29 132.1 78 78.2
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 2.9e-29 132.1 124 54.0
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 7.1e-28 127.5 64 89.1
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.2e-27 126.7 70 82.9
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-25 119.8 73 74.0
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 3.1e-23 112.1 58 82.8
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-22 109.8 120 47.5
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.5e-22 109.8 120 47.5
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 2.9e-21 105.5 58 81.0
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 4.6e-19 98.2 57 78.9
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.5e-12 75.9 44 77.3


User provided reference genes

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