Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.4e-148 528.9 275 100.0
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.2e-83 313.9 226 74.3
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 6.0e-83 311.6 245 66.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 3.0e-82 309.3 244 65.2
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.9e-82 308.9 211 74.4
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.1e-82 308.5 270 61.9
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 5.1e-82 308.5 274 60.9
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 5.1e-82 308.5 247 66.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 8.6e-82 307.8 264 66.7
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-81 307.0 270 61.1
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.3e-81 305.4 224 68.8
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 4.3e-81 305.4 267 61.8
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 5.6e-81 305.1 247 65.6
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 9.5e-81 304.3 228 68.4
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 9.5e-81 304.3 226 69.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.2e-80 303.9 222 70.3
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.2e-80 303.9 232 69.8
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 2.1e-80 303.1 212 71.2
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.8e-80 302.8 211 72.0
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.8e-80 302.8 228 68.4
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 3.6e-80 302.4 245 64.9
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 4.7e-80 302.0 231 66.2
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 4.7e-80 302.0 222 69.4
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 6.2e-80 301.6 213 70.9
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.1e-79 300.8 256 65.2
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.4e-79 300.4 211 75.4
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.8e-79 300.1 256 60.9
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.1e-79 299.3 222 66.7
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 3.1e-79 299.3 276 60.1
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 5.2e-79 298.5 232 64.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 5.2e-79 298.5 232 64.7
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 8.9e-79 297.7 220 69.1
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-78 297.4 218 68.8
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.5e-78 297.0 253 62.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.5e-78 297.0 252 61.5
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.0e-78 296.6 222 67.6
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.6e-78 296.2 230 65.7
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 2.6e-78 296.2 219 68.5
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.4e-78 295.8 234 63.7
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 3.4e-78 295.8 222 66.7
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.8e-78 295.0 294 56.8
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 5.8e-78 295.0 211 69.7
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 5.8e-78 295.0 213 70.0
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 5.8e-78 295.0 238 66.0
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 7.6e-78 294.7 237 65.0
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 7.6e-78 294.7 237 65.0
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 9.9e-78 294.3 232 64.7
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 9.9e-78 294.3 232 64.7
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 9.9e-78 294.3 237 65.0
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-77 293.1 222 67.1
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 2.2e-77 293.1 232 64.7
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.2e-77 293.1 222 67.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.2e-77 293.1 233 65.7
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.9e-77 292.0 211 68.2
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 4.9e-77 292.0 211 73.5
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.9e-77 292.0 233 65.2
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 8.4e-77 291.2 216 69.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 8.4e-77 291.2 211 69.7
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.1e-76 290.8 224 67.4
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.1e-76 290.8 250 63.6
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.1e-76 290.8 211 69.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.9e-76 290.0 225 64.4
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.9e-76 290.0 212 67.5
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.9e-76 290.0 238 68.5
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.4e-76 289.7 222 65.3
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.4e-76 289.7 234 66.7
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.4e-76 289.7 220 65.0
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.4e-76 289.7 225 66.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.2e-76 289.3 233 64.8
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 5.4e-76 288.5 211 69.7
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 5.4e-76 288.5 223 67.3
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.1e-76 288.1 244 61.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.2e-75 287.3 212 68.4
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.7e-75 286.2 222 69.8
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.7e-75 286.2 249 62.2
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 4.6e-75 285.4 233 63.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 4.6e-75 285.4 207 72.9
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 4.6e-75 285.4 225 66.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 6.0e-75 285.0 226 65.0
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 6.0e-75 285.0 211 68.2
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 6.0e-75 285.0 244 60.7
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.0e-75 285.0 262 59.2
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 7.8e-75 284.6 214 65.9
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 7.8e-75 284.6 222 69.8
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 7.8e-75 284.6 212 68.4
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.3e-74 283.9 236 61.0
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-74 283.5 223 65.0
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-74 283.5 223 65.0
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.7e-74 283.5 207 67.6
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.7e-74 283.5 278 57.6
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.7e-74 283.5 240 62.9
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.3e-74 283.1 240 62.9
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.0e-74 282.7 244 60.2
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 3.9e-74 282.3 225 63.6
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.9e-74 282.3 245 62.9
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 5.1e-74 282.0 211 70.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 8.6e-74 281.2 225 68.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.1e-73 280.8 236 63.6
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.1e-73 280.8 228 66.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.1e-73 280.8 211 67.8
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 2.5e-73 279.6 211 70.1
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 3.3e-73 279.3 234 63.7
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 3.3e-73 279.3 234 63.7
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.3e-73 279.3 216 67.1
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 3.3e-73 279.3 232 59.5
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 5.6e-73 278.5 209 67.5
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 5.6e-73 278.5 223 65.0
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 5.6e-73 278.5 224 65.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 7.3e-73 278.1 240 61.7
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 7.3e-73 278.1 227 61.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-72 277.3 232 59.1
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 2.1e-72 276.6 236 61.9
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 2.8e-72 276.2 223 65.0
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.8e-72 276.2 206 69.9
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.6e-72 275.8 253 59.7
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.6e-72 275.8 224 63.4
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-71 274.2 219 65.3
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.4e-71 273.9 212 64.6
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 4.0e-71 272.3 228 60.5
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 4.0e-71 272.3 225 62.2
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.2e-71 271.9 206 66.5
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.5e-70 270.4 211 65.9
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.4e-70 269.2 217 63.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.8e-70 268.5 212 62.7
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 7.6e-70 268.1 255 54.5
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.9e-70 267.7 204 65.2
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.7e-69 266.9 211 65.9
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.7e-69 266.9 213 64.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.4e-69 264.6 210 61.0
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.4e-68 263.1 233 59.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 4.2e-68 262.3 192 69.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 6.0e-67 258.5 213 60.6
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 6.0e-67 258.5 213 60.6
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 7.8e-67 258.1 213 60.6
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 7.8e-67 258.1 213 60.6
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 7.8e-67 258.1 213 60.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 3.0e-66 256.1 209 61.2
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.5e-65 253.1 211 61.1
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.4e-62 242.7 173 68.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.4e-60 237.3 198 63.6
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.9e-60 236.9 207 62.8
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.2e-59 234.2 174 67.8
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.1e-55 221.1 236 56.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 4.5e-54 215.7 216 53.7
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.2e-52 209.1 132 77.3
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.5e-52 208.8 320 43.4
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.2e-51 207.6 213 52.1
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 2.7e-51 206.5 228 50.4
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 5.1e-50 202.2 129 78.3
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-49 200.7 129 77.5
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.5e-49 199.9 232 46.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.2e-45 186.8 230 43.5
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 4.6e-43 179.1 209 47.8
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 2.4e-39 166.8 227 44.9
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.6e-35 154.1 163 45.4
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 8.5e-29 131.7 192 42.2
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 5.1e-26 122.5 137 47.4
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.2e-24 115.2 93 64.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 5.7e-17 92.4 106 45.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.2e-12 76.6 59 59.3
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 5.2e-10 69.3 89 41.6
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.3e-08 64.7 65 50.8
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 5.3e-07 59.3 81 45.7
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 9.1e-07 58.5 61 50.8
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.7e-06 57.0 70 47.1
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.5e-06 56.6 34 76.5


User provided reference genes

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