Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.3e-141 506.5 292 100.0
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.2e-87 325.5 198 86.4
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.3e-48 196.8 254 48.8
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.5e-47 194.1 259 49.0
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.8e-45 187.2 256 47.3
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 6.9e-45 185.3 254 46.5
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.2e-41 174.5 255 45.1
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 6.0e-41 172.2 335 40.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.3e-40 171.0 261 44.8
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 6.6e-40 168.7 231 46.8
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.3e-39 166.0 229 46.3
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 5.6e-39 165.6 254 44.5
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 9.6e-39 164.9 255 45.5
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 9.6e-39 164.9 232 46.6
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.3e-38 164.5 227 49.8
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.3e-38 164.5 231 46.3
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.6e-38 164.1 232 47.4
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 2.8e-38 163.3 229 47.6
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 3.6e-38 162.9 232 47.4
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 4.8e-38 162.5 228 48.2
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 6.2e-38 162.2 225 47.6
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 8.1e-38 161.8 257 45.1
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.1e-37 161.4 228 45.6
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.4e-37 161.0 243 45.3
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.8e-37 160.6 256 45.7
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.8e-37 160.6 252 44.4
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 2.4e-37 160.2 254 43.3
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 9.0e-37 158.3 255 43.9
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 1.2e-36 157.9 233 47.2
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.2e-36 157.9 254 41.7
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.5e-36 157.5 229 45.4
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.0e-36 157.1 253 43.1
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.4e-36 156.4 274 43.1
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 4.5e-36 156.0 254 42.9
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 7.6e-36 155.2 279 39.8
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.7e-35 154.1 233 44.2
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.7e-35 154.1 236 44.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 2.9e-35 153.3 254 41.7
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.8e-35 152.9 253 43.1
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 8.4e-35 151.8 255 42.4
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 3.2e-34 149.8 225 44.9
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 5.4e-34 149.1 255 40.8
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.4e-34 149.1 225 43.6
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 5.4e-34 149.1 255 41.6
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 7.1e-34 148.7 244 43.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 9.3e-34 148.3 231 46.3
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.6e-33 147.5 229 45.0
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.5e-33 146.4 255 40.4
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 7.9e-33 145.2 231 44.2
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 7.9e-33 145.2 254 40.9
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.0e-32 144.8 255 40.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.3e-32 144.4 244 41.4
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.8e-32 144.1 256 42.2
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.8e-32 144.1 255 41.6
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 3.9e-32 142.9 230 44.8
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 6.7e-32 142.1 255 40.8
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.7e-32 142.1 225 41.8
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 8.7e-32 141.7 171 52.6
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.1e-31 141.4 255 41.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.1e-31 141.4 200 49.0
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.5e-31 141.0 228 42.5
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.9e-31 140.6 231 42.4
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.3e-31 139.8 230 41.7
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 4.3e-31 139.4 261 42.5
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 5.6e-31 139.0 255 40.4
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 7.4e-31 138.7 256 38.7
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 7.4e-31 138.7 228 43.0
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 9.6e-31 138.3 171 50.9
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 9.6e-31 138.3 172 49.4
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.3e-30 137.9 255 38.8
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.1e-30 137.1 229 41.5
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.8e-30 136.7 191 44.5
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 2.8e-30 136.7 255 40.8
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 3.7e-30 136.3 257 40.5
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 4.8e-30 136.0 197 46.2
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 6.2e-30 135.6 230 43.0
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.2e-30 135.6 265 40.8
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 8.1e-30 135.2 225 42.2
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.8e-29 134.0 254 39.0
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 4.0e-29 132.9 228 42.5
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 5.3e-29 132.5 237 39.7
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.2e-28 131.3 255 39.6
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.2e-28 131.3 212 42.0
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.2e-28 131.3 230 41.7
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.6e-28 130.2 264 39.4
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 2.6e-28 130.2 240 40.0
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 4.5e-28 129.4 240 40.0
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 4.5e-28 129.4 191 44.5
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 5.8e-28 129.0 232 41.4
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 5.8e-28 129.0 267 37.8
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 5.8e-28 129.0 232 41.4
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 7.6e-28 128.6 233 40.3
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 1.7e-27 127.5 232 41.4
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.7e-27 127.5 250 39.6
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.2e-27 127.1 246 39.0
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 4.9e-27 125.9 259 37.5
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 4.9e-27 125.9 261 37.9
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 6.4e-27 125.6 280 39.6
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.9e-26 124.0 231 39.4
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 2.4e-26 123.6 209 42.1
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.2e-26 123.2 264 39.4
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-26 122.9 258 36.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 4.2e-26 122.9 251 39.8
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 9.3e-26 121.7 242 37.2
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.1e-25 120.6 234 38.5
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 3.5e-25 119.8 218 41.7
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 3.5e-25 119.8 219 40.6
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 4.6e-25 119.4 171 45.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.6e-25 119.4 231 40.3
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 6.0e-25 119.0 257 39.7
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 6.0e-25 119.0 257 39.7
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.0e-24 118.2 197 42.1
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-24 117.9 237 38.0
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.8e-24 117.5 248 39.1
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.0e-24 116.7 179 44.1
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 1.5e-23 114.4 102 60.8
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 4.3e-23 112.8 196 42.3
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 5.6e-23 112.5 269 35.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 9.6e-23 111.7 226 38.5
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.4e-21 107.8 83 62.7
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.8e-21 107.5 280 32.5
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.3e-21 105.9 99 59.6
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.0e-20 104.0 136 47.8
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 9.3e-18 95.1 257 34.2
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 7.9e-17 92.0 255 35.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.3e-16 91.3 221 35.7
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 2.3e-16 90.5 73 63.0
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.3e-16 90.5 199 39.2
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.3e-16 90.5 177 33.9
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 5.1e-16 89.4 85 57.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.5e-15 87.8 196 36.2
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-13 79.7 71 57.7
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-13 79.7 71 57.7
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-13 79.7 71 57.7
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-13 79.7 71 57.7
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-12 77.4 196 34.2
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 2.0e-12 77.4 196 34.2
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-12 77.0 71 54.9
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 2.6e-12 77.0 199 34.2
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.6e-12 77.0 169 36.1
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 3.4e-12 76.6 56 67.9
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.5e-12 76.3 71 54.9
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-11 75.1 61 63.9
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.0e-11 75.1 56 66.1
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.7e-11 74.3 56 64.3
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 3.2e-10 70.1 209 32.1
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-10 69.7 196 34.7
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 5.5e-10 69.3 208 33.7
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.6e-09 66.6 164 36.0
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 7.9e-09 65.5 54 59.3
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 7.9e-09 65.5 51 58.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 1.3e-08 64.7 172 33.7
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 6.7e-08 62.4 209 30.6
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 8.7e-08 62.0 93 39.8
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.1e-07 61.6 188 30.9
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.9e-07 60.8 51 56.9
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 9.7e-07 58.5 46 60.9
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 9.7e-07 58.5 46 60.9
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 8.2e-06 55.5 201 33.3


User provided reference genes

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