Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 7.0e-71 270.4 126 100.0
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 5.6e-60 234.2 117 92.3
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.9e-48 194.5 117 73.5
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 8.3e-48 193.7 116 75.9
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.4e-47 193.0 117 74.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.4e-47 192.2 117 72.6
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.2e-47 191.8 117 72.6
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.4e-47 191.0 117 76.1
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.2e-46 189.9 117 73.5
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.6e-46 189.5 117 72.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-46 189.1 117 71.8
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.7e-46 188.7 116 74.1
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 2.7e-46 188.7 116 73.3
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 4.6e-46 188.0 116 74.1
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 4.6e-46 188.0 117 73.5
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 6.0e-46 187.6 116 72.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 7.8e-46 187.2 117 73.5
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.0e-45 186.8 116 71.6
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.7e-45 186.0 117 72.6
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.3e-45 185.7 117 71.8
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 3.0e-45 185.3 117 71.8
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.0e-45 185.3 116 73.3
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.0e-45 185.3 117 72.6
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 3.9e-45 184.9 112 75.0
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.9e-45 184.9 116 72.4
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.9e-45 184.9 116 72.4
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 5.0e-45 184.5 117 72.6
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 6.6e-45 184.1 117 67.5
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.6e-45 184.1 117 73.5
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.1e-44 183.3 117 72.6
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.5e-44 183.0 121 70.2
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.5e-44 183.0 117 72.6
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.5e-44 183.0 117 70.9
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.5e-44 182.2 117 70.1
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.3e-44 181.8 117 70.1
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 3.3e-44 181.8 117 72.6
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 3.3e-44 181.8 116 69.0
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 4.3e-44 181.4 117 66.7
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 4.3e-44 181.4 117 66.7
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 4.3e-44 181.4 116 71.6
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 5.6e-44 181.0 116 71.6
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 7.3e-44 180.6 117 66.7
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 7.3e-44 180.6 117 66.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 7.3e-44 180.6 117 70.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 9.5e-44 180.3 116 72.4
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 9.5e-44 180.3 117 73.5
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 9.5e-44 180.3 117 70.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.2e-43 179.9 109 75.2
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.1e-43 179.1 108 74.1
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.1e-43 179.1 118 70.3
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 3.6e-43 178.3 117 66.7
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 4.7e-43 177.9 116 68.1
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 6.2e-43 177.6 112 73.2
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 6.2e-43 177.6 116 71.6
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 8.1e-43 177.2 117 71.8
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.1e-42 176.8 111 72.1
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.1e-42 176.8 111 71.2
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.1e-42 176.8 117 65.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.4e-42 176.4 117 71.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-42 176.4 111 71.2
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.8e-42 176.0 112 70.5
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.3e-42 175.6 117 68.4
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.1e-42 175.3 117 70.1
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.1e-42 175.3 117 66.7
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 3.1e-42 175.3 112 68.8
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.0e-42 174.9 117 71.8
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 4.0e-42 174.9 116 67.2
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 5.2e-42 174.5 117 69.2
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.2e-42 174.5 117 65.0
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.2e-42 174.5 111 71.2
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 5.2e-42 174.5 117 69.2
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 6.8e-42 174.1 110 72.7
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 6.8e-42 174.1 116 70.7
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 6.8e-42 174.1 117 64.1
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 6.8e-42 174.1 117 66.7
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 8.9e-42 173.7 111 71.2
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 8.9e-42 173.7 118 66.1
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.2e-41 173.3 117 64.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.5e-41 172.9 117 64.1
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.0e-41 172.6 115 67.0
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.0e-41 172.6 102 73.5
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.6e-41 172.2 112 70.5
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 3.4e-41 171.8 117 65.8
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 5.8e-41 171.0 115 66.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 5.8e-41 171.0 110 70.9
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 5.8e-41 171.0 112 67.9
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 9.8e-41 170.2 117 63.2
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 9.8e-41 170.2 117 64.1
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.7e-40 169.5 116 65.5
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.7e-40 169.5 112 66.1
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.7e-40 168.3 110 70.0
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 8.3e-40 167.2 111 68.5
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.1e-39 166.8 117 63.2
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.4e-39 166.4 117 66.7
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.4e-39 166.4 117 62.4
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.4e-39 166.4 117 65.0
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-39 166.4 111 66.7
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.9e-39 166.0 111 69.4
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.9e-39 166.0 111 69.4
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 3.2e-39 165.2 116 65.5
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 4.1e-39 164.9 117 66.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.1e-39 164.9 117 64.1
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.1e-39 164.1 117 61.5
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 9.2e-39 163.7 111 68.5
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.2e-38 163.3 112 67.9
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.6e-38 162.9 116 67.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-38 162.9 118 63.6
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.1e-38 162.5 117 60.7
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.6e-38 161.4 117 61.5
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.0e-38 161.0 117 60.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.0e-37 160.2 117 62.4
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.0e-37 160.2 117 61.5
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.7e-37 159.5 110 68.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 3.0e-37 158.7 117 60.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 3.0e-37 158.7 117 61.5
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 3.0e-37 158.7 117 60.7
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 3.0e-37 158.7 117 60.7
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 6.6e-37 157.5 112 63.4
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.6e-37 157.1 118 64.4
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.1e-36 156.8 117 59.8
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.3e-36 154.8 110 65.5
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.2e-35 151.0 118 60.2
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.4e-34 149.8 94 70.2
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.3e-34 149.1 116 60.3
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.3e-34 149.1 127 58.3
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.6e-33 145.6 117 62.4
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 7.6e-33 144.1 112 59.8
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.3e-32 143.3 112 61.6
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 4.9e-32 141.4 116 57.8
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.9e-28 129.4 118 50.0
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 4.3e-28 128.3 88 67.0
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.4e-25 118.6 117 47.0
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 4.9e-24 114.8 111 50.5
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.8e-22 107.5 103 45.6
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.1e-19 97.4 69 66.7
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.9e-18 94.4 78 59.0
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 9.9e-17 90.5 62 67.7
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.9e-16 89.0 44 86.4
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 8.4e-16 87.4 78 55.1
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.4e-15 86.7 84 51.2
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.4e-15 85.9 68 58.8
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 5.4e-15 84.7 66 57.6
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 2.1e-14 82.8 67 59.7
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 9.6e-12 73.9 69 53.6
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.3e-11 73.6 57 59.6
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 3.1e-10 68.9 51 54.9
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 2.0e-09 66.2 36 80.6
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 5.8e-09 64.7 42 66.7
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.1e-07 60.5 61 49.2


User provided reference genes

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