Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.3e-193 677.6 354 100.0
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 8.8e-95 351.3 243 81.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.3e-41 173.3 255 47.1
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 9.5e-41 171.8 295 41.7
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 6.8e-39 165.6 297 42.8
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.0e-38 164.1 291 41.2
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.5e-38 162.2 304 40.8
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 4.6e-35 152.9 263 45.6
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.9e-34 149.8 254 46.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.9e-33 147.5 340 36.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.5e-33 147.1 228 44.7
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.5e-33 147.1 228 44.7
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-32 144.8 261 41.0
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-31 141.0 252 41.3
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.0e-31 139.8 259 40.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-31 139.8 252 41.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.9e-29 133.7 311 38.3
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 6.4e-29 132.5 312 37.2
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.9e-28 131.0 311 38.3
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.4e-28 130.6 374 33.2
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 4.1e-28 129.8 294 37.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.2e-27 128.3 316 37.3
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 2.7e-27 127.1 285 37.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 4.6e-27 126.3 231 43.3
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 6.0e-27 125.9 260 40.4
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.7e-26 124.4 259 38.6
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.3e-26 124.0 248 41.5
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.1e-26 122.9 289 36.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.6e-26 122.5 259 38.2
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 6.6e-26 122.5 266 41.4
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 8.6e-26 122.1 317 36.6
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.1e-25 121.7 286 37.4
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.1e-25 121.7 300 37.0
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.1e-25 121.7 282 34.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.5e-25 121.3 266 39.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.5e-25 121.3 288 36.8
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.5e-25 121.3 288 35.1
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.9e-25 120.9 230 41.7
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-25 120.9 317 36.3
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.9e-25 120.9 224 38.8
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.3e-25 119.8 314 36.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.3e-25 119.8 262 35.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.6e-25 119.4 266 37.2
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.6e-25 119.4 266 37.2
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 7.3e-25 119.0 238 43.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.3e-25 119.0 286 36.7
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.2e-24 118.2 292 34.9
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 3.6e-24 116.7 182 44.5
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 6.2e-24 115.9 189 42.9
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 6.2e-24 115.9 234 39.3
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.1e-23 115.2 325 36.3
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.1e-23 115.2 176 45.5
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.4e-23 114.8 226 40.3
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.4e-23 114.8 291 34.7
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.4e-23 114.8 291 36.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.5e-22 111.3 261 36.4
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.0e-22 110.9 236 39.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.4e-22 110.2 214 38.8
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.4e-22 110.2 272 37.5
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 4.4e-22 109.8 219 38.4
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 4.4e-22 109.8 257 38.1
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.4e-22 109.8 264 38.3
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 9.9e-22 108.6 271 35.8
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.9e-21 107.1 186 41.4
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.9e-21 107.1 253 37.9
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 3.8e-21 106.7 236 40.3
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 3.8e-21 106.7 197 39.6
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 3.8e-21 106.7 197 39.6
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 4.9e-21 106.3 197 39.6
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 4.9e-21 106.3 197 39.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 4.9e-21 106.3 197 39.6
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 6.4e-21 105.9 203 40.4
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.1e-20 105.1 233 36.1
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.4e-20 104.0 248 36.3
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.4e-20 104.0 238 37.4
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 3.2e-20 103.6 207 42.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.2e-20 103.6 226 39.4
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 4.2e-20 103.2 194 39.2
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 7.1e-20 102.4 274 37.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 9.2e-20 102.1 290 32.4
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 9.2e-20 102.1 205 39.0
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 9.2e-20 102.1 259 37.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 1.6e-19 101.3 222 38.3
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.6e-19 101.3 223 39.5
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.1e-19 100.9 200 38.0
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.1e-19 100.9 221 38.9
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.6e-19 99.8 287 35.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 6.0e-19 99.4 291 32.6
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.7e-18 97.8 226 35.4
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.3e-18 97.4 245 37.1
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 3.0e-18 97.1 315 33.3
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 3.0e-18 97.1 231 36.4
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.9e-18 96.7 198 38.9
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.5e-17 94.0 251 34.3
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 7.3e-17 92.4 186 40.3
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 7.3e-17 92.4 313 31.6
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.6e-16 91.3 219 34.2
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-16 90.5 200 37.5
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-16 90.5 200 37.5
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.8e-16 90.5 223 33.6
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 8.1e-16 89.0 210 33.8
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.1e-15 88.6 253 32.0
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.8e-15 87.8 286 32.5
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 9.0e-15 85.5 256 35.9
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.2e-14 85.1 268 32.8
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 4.4e-14 83.2 307 32.9
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 9.9e-14 82.0 229 33.6
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-13 81.3 203 35.0
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 4.9e-13 79.7 100 48.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 6.4e-13 79.3 190 34.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 6.4e-13 79.3 124 46.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.9e-12 77.8 277 31.0
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 2.4e-12 77.4 147 41.5
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 9.3e-12 75.5 261 30.3
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.6e-11 74.7 219 31.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.1e-11 74.3 203 34.5
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.7e-11 73.9 263 30.8
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 4.6e-11 73.2 222 33.3
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.7e-10 71.2 181 32.6
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.3e-10 70.9 68 55.9
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.3e-10 70.9 313 30.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.0e-10 70.5 256 32.4
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.0e-10 70.5 146 39.7
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 5.1e-10 69.7 220 33.2
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 5.1e-10 69.7 150 39.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 6.6e-10 69.3 253 32.4
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 8.7e-10 68.9 199 32.7
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 5.6e-09 66.2 269 32.7
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 7.3e-09 65.9 222 29.7
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 7.3e-09 65.9 218 29.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 3.6e-08 63.5 214 29.9
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 8.1e-08 62.4 131 37.4
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.1e-07 62.0 310 28.4
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.1e-07 62.0 295 27.1
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-07 60.1 197 31.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-07 60.1 197 31.0
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-07 59.7 197 31.0
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.0e-07 58.9 197 31.0
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-06 58.5 197 30.5
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-06 58.5 197 30.5
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 2.6e-06 57.4 62 51.6


User provided reference genes

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