Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 3.6e-79 298.1 144 100.0
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.2e-50 203.4 129 78.3
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 7.6e-29 131.0 120 57.5
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 4.9e-28 128.3 122 53.3
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 1.1e-27 127.1 122 53.3
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.4e-27 126.7 117 53.0
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 2.3e-25 119.4 126 52.4
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 3.0e-25 119.0 102 59.8
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 8.7e-25 117.5 130 50.8
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 8.7e-25 117.5 117 54.7
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 4.3e-24 115.2 126 46.8
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.6e-23 113.2 91 58.2
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.6e-23 113.2 91 59.3
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 2.1e-23 112.8 116 49.1
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 2.1e-23 112.8 123 52.8
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 2.1e-23 112.8 106 53.8
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 3.6e-23 112.1 111 50.5
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 3.6e-23 112.1 100 58.0
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 6.2e-23 111.3 121 51.2
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-22 110.5 125 48.0
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 1.4e-22 110.2 135 45.2
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.4e-22 110.2 114 48.2
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.4e-22 110.2 95 56.8
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 1.8e-22 109.8 108 54.6
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 2.4e-22 109.4 109 50.5
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 2.4e-22 109.4 112 51.8
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 3.1e-22 109.0 116 51.7
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 3.1e-22 109.0 111 49.5
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 4.0e-22 108.6 100 57.0
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 5.2e-22 108.2 79 59.5
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 5.2e-22 108.2 113 53.1
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 9.0e-22 107.5 90 57.8
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.2e-21 107.1 111 49.5
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.5e-21 106.7 95 57.9
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 1.5e-21 106.7 79 62.0
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 2.0e-21 106.3 110 49.1
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 2.0e-21 106.3 116 46.6
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 2.6e-21 105.9 111 49.5
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 3.4e-21 105.5 111 48.6
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 4.4e-21 105.1 110 48.2
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 4.4e-21 105.1 86 58.1
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 5.8e-21 104.8 87 48.3
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 7.6e-21 104.4 83 61.4
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 9.9e-21 104.0 131 45.0
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 9.9e-21 104.0 94 56.4
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 9.9e-21 104.0 94 56.4
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 9.9e-21 104.0 94 56.4
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 9.9e-21 104.0 99 53.5
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 1.3e-20 103.6 83 57.8
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 1.3e-20 103.6 84 59.5
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 1.7e-20 103.2 131 45.8
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 1.7e-20 103.2 81 61.7
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.7e-20 103.2 87 48.3
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.7e-20 103.2 87 48.3
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.7e-20 103.2 98 51.0
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.2e-20 102.8 103 52.4
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.8e-20 102.1 81 59.3
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 3.8e-20 102.1 87 47.1
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 4.9e-20 101.7 95 55.8
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.9e-20 101.7 99 52.5
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 6.4e-20 101.3 83 57.8
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 6.4e-20 101.3 98 53.1
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 1.9e-19 99.8 83 56.6
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.9e-19 99.8 87 46.0
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.9e-19 99.8 79 60.8
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.2e-19 99.0 115 44.3
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.2e-19 99.0 115 44.3
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 4.2e-19 98.6 99 50.5
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 7.1e-19 97.8 79 58.2
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 9.3e-19 97.4 85 56.5
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 9.3e-19 97.4 87 44.8
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-18 97.1 107 41.1
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 2.1e-18 96.3 87 55.2
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 2.7e-18 95.9 86 54.7
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 4.6e-18 95.1 114 46.5
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 4.6e-18 95.1 79 57.0
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 4.6e-18 95.1 83 54.2
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 6.0e-18 94.7 83 56.6
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.0e-17 94.0 90 54.4
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 1.0e-17 94.0 100 51.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.7e-17 93.2 105 49.5
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 1.7e-17 93.2 103 48.5
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 3.0e-17 92.4 134 41.0
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 3.0e-17 92.4 90 48.9
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 5.1e-17 91.7 88 52.3
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 2.5e-16 89.4 137 38.7
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 2.5e-16 89.4 90 48.9
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 2.5e-16 89.4 116 45.7
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 9.6e-16 87.4 112 45.5
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 9.6e-16 87.4 112 45.5
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 1.3e-15 87.0 112 45.5
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 1.6e-15 86.7 112 45.5
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 6.2e-15 84.7 79 51.9
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 6.2e-15 84.7 98 48.0
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.1e-14 84.0 79 50.6
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 1.1e-14 84.0 79 50.6
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 1.1e-14 84.0 79 50.6
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 1.1e-14 84.0 79 50.6
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 1.1e-14 84.0 79 50.6
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 2.4e-11 72.8 67 49.3
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 1.6e-10 70.1 76 48.7
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.5e-08 62.8 68 48.5
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 4.3e-08 62.0 63 47.6
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 7.4e-08 61.2 56 55.4
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.3e-07 60.5 50 62.0
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 4.0e-06 55.5 48 60.4
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 5.3e-06 55.1 48 54.2
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 9.0e-06 54.3 48 54.2
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 9.0e-06 54.3 48 54.2


User provided reference genes

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