Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1542 Ceratophyllum demersum HOM05D003789 ORTHO05D004158 9.1e-101 370.2 177 100.0
CDE12G0940 Ceratophyllum demersum HOM05D003789 ORTHO05D004158 5.4e-45 184.9 170 62.4
CDE04G3651 Ceratophyllum demersum HOM05D003789 ORTHO05D004158 5.1e-43 178.3 170 60.6
CAN.G220.37 Capsicum annuum HOM05D003789 ORTHO05D004158 8.1e-33 144.4 174 52.9
PGSC0003DMG400017165 Solanum tuberosum HOM05D003789 ORTHO05D004158 2.6e-31 139.4 174 52.3
Solyc09g090320.2 Solanum lycopersicum HOM05D003789 ORTHO05D004158 3.4e-31 139.0 174 52.3
Sopen09g033220 Solanum pennellii HOM05D003789 ORTHO05D004158 3.4e-31 139.0 174 52.3
Peaxi162Scf00392g00731 Petunia axillaris HOM05D003789 ORTHO05D004158 3.8e-30 135.6 171 51.5
BcaB02g08616 Brassica carinata HOM05D003789 ORTHO05D004158 8.4e-30 134.4 170 48.8
Eucgr.H03019 Eucalyptus grandis HOM05D003789 ORTHO05D004158 8.4e-30 134.4 171 49.7
Thhalv10024385m.g Eutrema salsugineum HOM05D003789 ORTHO05D004158 8.4e-30 134.4 173 49.7
Aa31LG9G3030 Aethionema arabicum HOM05D003789 ORTHO05D004158 1.1e-29 134.0 174 49.4
AL7G41920 Arabidopsis lyrata HOM05D003789 ORTHO05D004158 1.4e-29 133.7 170 48.8
Carub.0007s2795 Capsella rubella HOM05D003789 ORTHO05D004158 1.4e-29 133.7 170 48.8
Sopen03g001620 Solanum pennellii HOM05D003789 ORTHO05D004158 1.4e-29 133.7 174 50.6
PGSC0003DMG400013454 Solanum tuberosum HOM05D003789 ORTHO05D004158 1.4e-29 133.7 172 51.2
Sp7g12360 Schrenkiella parvula HOM05D003789 ORTHO05D004158 1.9e-29 133.3 170 48.8
Ciclev10004434m.g Citrus clementina HOM05D003789 ORTHO05D004158 2.4e-29 132.9 171 51.5
TAR633G1733 Trochodendron aralioides HOM05D003789 ORTHO05D004158 2.4e-29 132.9 171 51.5
AT4G14330 Arabidopsis thaliana HOM05D003789 ORTHO05D004158 3.2e-29 132.5 173 49.7
BcaC02g09326 Brassica carinata HOM05D003789 ORTHO05D004158 4.2e-29 132.1 170 48.2
C04p41390 Brassica napus HOM05D003789 ORTHO05D004158 4.2e-29 132.1 170 48.2
BolC4t25718H Brassica oleracea HOM05D003789 ORTHO05D004158 4.2e-29 132.1 170 48.2
Nitab4.5_0004509g0030 Nicotiana tabacum HOM05D003789 ORTHO05D004158 4.2e-29 132.1 170 49.4
vmacro15457 Vaccinium macrocarpon HOM05D003789 ORTHO05D004158 4.2e-29 132.1 173 50.9
A04p07720 Brassica napus HOM05D003789 ORTHO05D004158 5.4e-29 131.7 170 48.2
BraA04t16464Z Brassica rapa HOM05D003789 ORTHO05D004158 5.4e-29 131.7 170 48.2
Manes.15G043000 Manihot esculenta HOM05D003789 ORTHO05D004158 5.4e-29 131.7 173 50.3
Solyc03g005620.4 Solanum lycopersicum HOM05D003789 ORTHO05D004158 7.1e-29 131.3 174 50.0
CARHR220530 Cardamine hirsuta HOM05D003789 ORTHO05D004158 1.2e-28 130.6 174 48.3
Rhsim02G0041400 Rhododendron simsii HOM05D003789 ORTHO05D004158 1.2e-28 130.6 174 50.6
MD13G1216300 Malus domestica HOM05D003789 ORTHO05D004158 1.6e-28 130.2 173 50.9
Nitab4.5_0003268g0030 Nicotiana tabacum HOM05D003789 ORTHO05D004158 1.6e-28 130.2 170 49.4
Actinidia11355 Actinidia chinensis HOM05D003789 ORTHO05D004158 2.1e-28 129.8 173 50.3
Lsat_1_v5_gn_6_63340 Lactuca sativa HOM05D003789 ORTHO05D004158 2.1e-28 129.8 171 51.5
MD16G1221700 Malus domestica HOM05D003789 ORTHO05D004158 2.1e-28 129.8 173 49.7
TAR362G0255 Trochodendron aralioides HOM05D003789 ORTHO05D004158 2.1e-28 129.8 171 50.9
Aqoxy5G00187 Aquilegia oxysepala HOM05D003789 ORTHO05D004158 2.7e-28 129.4 171 48.5
DCAR_027329 Daucus carota HOM05D003789 ORTHO05D004158 2.7e-28 129.4 173 49.7
TWI53G1853 Tripterygium wilfordii HOM05D003789 ORTHO05D004158 2.7e-28 129.4 174 50.0
Nn3g19718 Nelumbo nucifera HOM05D003789 ORTHO05D004158 3.5e-28 129.0 171 50.9
Dinv27071 Davidia involucrata HOM05D003789 ORTHO05D004158 4.6e-28 128.6 172 48.8
Dinv29841 Davidia involucrata HOM05D003789 ORTHO05D004158 4.6e-28 128.6 172 48.8
vmacro08512 Vaccinium macrocarpon HOM05D003789 ORTHO05D004158 4.6e-28 128.6 172 50.0
Aa31LG8G9880 Aethionema arabicum HOM05D003789 ORTHO05D004158 6.0e-28 128.3 173 48.6
Aqoxy5G00186 Aquilegia oxysepala HOM05D003789 ORTHO05D004158 6.0e-28 128.3 171 49.7
CAN.G638.43 Capsicum annuum HOM05D003789 ORTHO05D004158 6.0e-28 128.3 172 50.6
Peaxi162Scf00319g00815 Petunia axillaris HOM05D003789 ORTHO05D004158 6.0e-28 128.3 159 52.2
Potri.008G169000 Populus trichocarpa HOM05D003789 ORTHO05D004158 6.0e-28 128.3 174 50.0
Sabra08G0128800 Salix brachista HOM05D003789 ORTHO05D004158 7.9e-28 127.9 174 50.0
Cc03_g05770 Coffea canephora HOM05D003789 ORTHO05D004158 1.0e-27 127.5 175 48.6
Nitab4.5_0000044g0510 Nicotiana tabacum HOM05D003789 ORTHO05D004158 1.0e-27 127.5 176 50.6
Lalb_Chr21g0312151 Lupinus albus HOM05D003789 ORTHO05D004158 1.8e-27 126.7 174 48.9
GSVIVG01027850001 Vitis vinifera HOM05D003789 ORTHO05D004158 1.8e-27 126.7 172 49.4
Duzib151G1033 Durio zibethinus HOM05D003789 ORTHO05D004158 2.3e-27 126.3 173 49.7
PGR004G1142 Punica granatum HOM05D003789 ORTHO05D004158 2.3e-27 126.3 178 48.9
RcHm_v2.0_Chr4g0394251 Rosa chinensis HOM05D003789 ORTHO05D004158 2.3e-27 126.3 174 50.0
FAN12G2545 Fragaria x ananassa HOM05D003789 ORTHO05D004158 3.0e-27 125.9 174 48.3
FAN17G0027 Fragaria x ananassa HOM05D003789 ORTHO05D004158 3.0e-27 125.9 174 48.3
Gohir.A02G040800 Gossypium hirsutum HOM05D003789 ORTHO05D004158 3.0e-27 125.9 172 50.0
Gohir.D02G046400 Gossypium hirsutum HOM05D003789 ORTHO05D004158 3.0e-27 125.9 172 50.0
Gorai.005G051200 Gossypium raimondii HOM05D003789 ORTHO05D004158 3.0e-27 125.9 172 50.0
Rhsim04G0176400 Rhododendron simsii HOM05D003789 ORTHO05D004158 3.0e-27 125.9 173 49.7
Cfa014741 Carpinus fangiana HOM05D003789 ORTHO05D004158 3.9e-27 125.6 173 48.6
FAN22G1125 Fragaria x ananassa HOM05D003789 ORTHO05D004158 3.9e-27 125.6 174 48.3
MBI07_g31086_MAGBIO Magnolia biondii HOM05D003789 ORTHO05D004158 3.9e-27 125.6 172 48.8
TWI09G1259 Tripterygium wilfordii HOM05D003789 ORTHO05D004158 3.9e-27 125.6 173 48.6
CiPaw.01G181800 Carya illinoinensis HOM05D003789 ORTHO05D004158 5.1e-27 125.2 171 48.5
QL06p019201 Quercus lobata HOM05D003789 ORTHO05D004158 5.1e-27 125.2 172 48.8
MELO3C023013.2 Cucumis melo HOM05D003789 ORTHO05D004158 6.7e-27 124.8 177 47.5
PSO210G3313 Papaver somniferum HOM05D003789 ORTHO05D004158 6.7e-27 124.8 171 48.5
PSO832G2621 Papaver somniferum HOM05D003789 ORTHO05D004158 6.7e-27 124.8 171 48.5
Psat6g117880 Pisum sativum HOM05D003789 ORTHO05D004158 6.7e-27 124.8 179 46.4
CsaV3_2G012640 Cucumis sativus L. HOM05D003789 ORTHO05D004158 8.7e-27 124.4 177 47.5
ECA248G2783 Erigeron canadensis HOM05D003789 ORTHO05D004158 8.7e-27 124.4 155 49.0
Potri.010G069400 Populus trichocarpa HOM05D003789 ORTHO05D004158 8.7e-27 124.4 174 49.4
Haze_11416 Corylus avellana HOM05D003789 ORTHO05D004158 1.1e-26 124.0 173 48.0
Glyma.20G207200 Glycine max HOM05D003789 ORTHO05D004158 1.1e-26 124.0 175 47.4
HanXRQChr02g0059181 Helianthus annuus HOM05D003789 ORTHO05D004158 1.1e-26 124.0 172 47.7
MSTRG.4146 Avicennia marina HOM05D003789 ORTHO05D004158 1.5e-26 123.6 173 49.1
CiPaw.02G109400 Carya illinoinensis HOM05D003789 ORTHO05D004158 1.5e-26 123.6 171 48.5
COL.COLO4_15914 Corchorus olitorius HOM05D003789 ORTHO05D004158 1.5e-26 123.6 174 48.3
Glyma.10G182800 Glycine max HOM05D003789 ORTHO05D004158 1.5e-26 123.6 175 47.4
Gohir.A10G109600 Gossypium hirsutum HOM05D003789 ORTHO05D004158 1.5e-26 123.6 173 48.6
Gohir.D10G157500 Gossypium hirsutum HOM05D003789 ORTHO05D004158 1.5e-26 123.6 173 48.6
Gorai.011G176900 Gossypium raimondii HOM05D003789 ORTHO05D004158 1.5e-26 123.6 173 48.6
ClCG06G007110 Citrullus lanatus HOM05D003789 ORTHO05D004158 1.9e-26 123.2 177 46.3
Manes.03G162300 Manihot esculenta HOM05D003789 ORTHO05D004158 1.9e-26 123.2 174 48.9
Actinidia35800 Actinidia chinensis HOM05D003789 ORTHO05D004158 2.5e-26 122.9 173 49.7
ATR0736G052 Amborella trichopoda HOM05D003789 ORTHO05D004158 2.5e-26 122.9 172 45.9
arahy.Tifrunner.gnm1.ann1.9E1YVZ Arachis hypogaea HOM05D003789 ORTHO05D004158 2.5e-26 122.9 173 48.6
CANSAT78G0857 Cannabis sativa HOM05D003789 ORTHO05D004158 3.3e-26 122.5 176 46.6
Lj3A687T20 Lonicera japonica HOM05D003789 ORTHO05D004158 3.3e-26 122.5 173 48.0
Phvul.010G069638 Phaseolus vulgaris HOM05D003789 ORTHO05D004158 3.3e-26 122.5 183 45.9
unitig_746.g26888 Utricularia gibba HOM05D003789 ORTHO05D004158 3.3e-26 122.5 175 49.1
HPP92_012886 Vanilla planifolia HOM05D003789 ORTHO05D004158 3.3e-26 122.5 143 53.1
BcaNung06100 Brassica carinata HOM05D003789 ORTHO05D004158 4.3e-26 122.1 150 51.3
CSS0032833 Camellia sinensis var. sinensis HOM05D003789 ORTHO05D004158 4.3e-26 122.1 171 48.5
Lalb_Chr02g0150271 Lupinus albus HOM05D003789 ORTHO05D004158 4.3e-26 122.1 174 48.3
Sabra10G0037700 Salix brachista HOM05D003789 ORTHO05D004158 4.3e-26 122.1 172 48.3
BcaC01g00201 Brassica carinata HOM05D003789 ORTHO05D004158 5.6e-26 121.7 153 52.3
C03p76830 Brassica napus HOM05D003789 ORTHO05D004158 5.6e-26 121.7 153 52.3
BolC3t19937H Brassica oleracea HOM05D003789 ORTHO05D004158 5.6e-26 121.7 153 52.3
Actinidia20820 Actinidia chinensis HOM05D003789 ORTHO05D004158 7.4e-26 121.3 172 48.3
Oeu059161.1 Olea europaea HOM05D003789 ORTHO05D004158 7.4e-26 121.3 173 48.6
Sed0015851 Sechium edule HOM05D003789 ORTHO05D004158 7.4e-26 121.3 172 47.7
Sed0025447 Sechium edule HOM05D003789 ORTHO05D004158 7.4e-26 121.3 174 47.1
arahy.Tifrunner.gnm1.ann1.4727LR Arachis hypogaea HOM05D003789 ORTHO05D004158 9.6e-26 120.9 173 48.0
Thecc.04G258900 Theobroma cacao HOM05D003789 ORTHO05D004158 9.6e-26 120.9 174 48.9
VMungo0720G2756 Vigna mungo HOM05D003789 ORTHO05D004158 9.6e-26 120.9 181 45.9
BraA08t34393Z Brassica rapa HOM05D003789 ORTHO05D004158 1.3e-25 120.6 153 51.6
A08p24380 Brassica napus HOM05D003789 ORTHO05D004158 1.6e-25 120.2 153 51.6
Hund03054 Selenicereus undatus HOM05D003789 ORTHO05D004158 1.6e-25 120.2 174 48.3
Sc13g0005850 Simmondsia chinensis HOM05D003789 ORTHO05D004158 1.6e-25 120.2 170 47.6
SGA_v2.0_scaffold31G12661 Striga asiatica HOM05D003789 ORTHO05D004158 2.1e-25 119.8 173 48.6
Nitab4.5_0000596g0050 Nicotiana tabacum HOM05D003789 ORTHO05D004158 2.8e-25 119.4 184 46.2
Hund11906 Selenicereus undatus HOM05D003789 ORTHO05D004158 3.7e-25 119.0 172 49.4
arahy.Tifrunner.gnm1.ann1.R97W00 Arachis hypogaea HOM05D003789 ORTHO05D004158 4.8e-25 118.6 179 46.4
EL10Ac3g04983 Beta vulgaris HOM05D003789 ORTHO05D004158 8.1e-25 117.9 173 46.8
HPP92_012912 Vanilla planifolia HOM05D003789 ORTHO05D004158 8.1e-25 117.9 173 45.7
Medtr1g075680 Medicago truncatula HOM05D003789 ORTHO05D004158 1.8e-24 116.7 181 47.0
AUR62002162 Chenopodium quinoa HOM05D003789 ORTHO05D004158 3.1e-24 115.9 170 47.6
AUR62015547 Chenopodium quinoa HOM05D003789 ORTHO05D004158 3.1e-24 115.9 170 47.6
Ca_09850_v3 Cicer arietinum L. HOM05D003789 ORTHO05D004158 3.1e-24 115.9 187 44.9
Lj3C690T4 Lonicera japonica HOM05D003789 ORTHO05D004158 4.0e-24 115.5 162 49.4
TPR.G10071 Trifolium pratense HOM05D003789 ORTHO05D004158 4.0e-24 115.5 184 45.7
Ah.13g072580 Amaranthus hybridus HOM05D003789 ORTHO05D004158 5.3e-24 115.2 170 48.2
Migut.G00503 Erythranthe guttata HOM05D003789 ORTHO05D004158 5.3e-24 115.2 176 45.5
Zm00001eb191700 Zea mays HOM05D003789 ORTHO05D004158 9.0e-24 114.4 165 49.7
Cpa.g.sc380.1 Carica papaya HOM05D003789 ORTHO05D004158 1.5e-23 113.6 149 51.0
Prupe.1G042100 Prunus persica HOM05D003789 ORTHO05D004158 2.6e-23 112.8 173 49.7
Lj5g0000033 Lotus japonicus HOM05D003789 ORTHO05D004158 1.7e-22 110.2 178 46.1
Lj6A628G38 Lonicera japonica HOM05D003789 ORTHO05D004158 3.8e-22 109.0 158 47.5
Os02g0810200 Oryza sativa ssp. japonica HOM05D003789 ORTHO05D004158 8.4e-22 107.8 147 49.0
SEGI_25573 Sequoiadendron giganteum HOM05D003789 ORTHO05D004158 7.1e-21 104.8 139 48.9
Oeu002942.1 Olea europaea HOM05D003789 ORTHO05D004158 3.9e-19 99.0 56 89.3
Zm00001eb258470 Zea mays HOM05D003789 ORTHO05D004158 1.5e-18 97.1 56 89.3
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 2.5e-18 96.3 56 87.5
SEGI_13239 Sequoiadendron giganteum HOM05D003789 ORTHO05D004158 3.3e-18 95.9 146 45.9
HanXRQChr01g0008651 Helianthus annuus HOM05D003789 ORTHO05D004158 2.1e-17 93.2 56 85.7
Prupe.1G005500 Prunus persica HOM05D003789 ORTHO05D004158 2.1e-17 93.2 56 85.7
DCAR_002311 Daucus carota HOM05D003789 ORTHO05D004158 8.2e-17 91.3 171 41.5
HanXRQChr12g0369731 Helianthus annuus HOM05D003789 ORTHO05D004158 2.6e-15 86.3 56 78.6
AagrBONN_evm.TU.Sc2ySwM_117.643 Anthoceros agrestis HOM05D003789 ORTHO05D004158 4.5e-15 85.5 143 42.7
Atru.chr1.2729 Acer truncatum HOM05D003789 ORTHO05D004158 5.8e-15 85.1 62 75.8
ATR1134G020 Amborella trichopoda HOM05D027102 ORTHO05D004158 5.0e-14 82.0 57 77.2
SEGI_24565 Sequoiadendron giganteum HOM05D003789 ORTHO05D004158 1.9e-13 80.1 56 75.0
Pp3c14_20330 Physcomitrium patens HOM05D003789 ORTHO05D004158 3.2e-13 79.3 56 75.0
Pp3c17_18420 Physcomitrium patens HOM05D003789 ORTHO05D004158 3.2e-13 79.3 56 75.0
Prupe.4G184200 Prunus persica HOM05D003789 ORTHO05D004158 2.7e-12 76.3 56 75.0
Mapoly0051s0002 Marchantia polymorpha HOM05D003789 ORTHO05D004158 7.9e-12 74.7 53 73.6
SMO134G0266 Selaginella moellendorffii HOM05D003789 ORTHO05D004158 6.7e-11 71.6 55 65.5
SMO137G0194 Selaginella moellendorffii HOM05D003789 ORTHO05D004158 6.7e-11 71.6 55 65.5
SMO351G0234 Selaginella moellendorffii HOM05D003789 ORTHO05D004158 1.2e-07 60.8 52 69.2
CBR_g12706 Chara braunii HOM05D003789 ORTHO05D004158 4.5e-07 58.9 157 32.5
ATR0681G245 Amborella trichopoda HOM05D003789 ORTHO05D004158 3.8e-06 55.8 42 71.4


User provided reference genes

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