Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 4701.0 2361 100.0
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 2728.0 2460 58.6
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 2723.3 2474 58.5
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2655.2 2453 56.7
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2644.4 2453 56.6
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 2637.1 2461 56.9
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 2625.9 2471 56.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 2620.1 2463 56.9
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 2610.1 2459 56.9
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 2565.0 2465 55.6
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 2562.7 2458 56.3
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 2561.2 2460 55.2
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 2552.7 2460 55.8
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2550.4 2465 55.6
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2548.5 2463 55.5
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 2547.3 2468 55.5
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2546.2 2465 55.9
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2542.7 2468 55.4
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2541.9 2460 55.8
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2533.8 2464 55.5
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 2531.1 2473 55.4
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2528.1 2466 55.4
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 2523.8 2467 55.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2517.3 2474 54.8
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2499.5 2470 54.5
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2498.8 2465 54.9
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 2498.0 2452 55.3
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 2497.6 2514 53.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 2496.8 2469 54.3
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 2484.1 2473 54.3
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2469.5 2423 55.2
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 2452.9 2456 54.4
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2449.9 2473 54.1
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2447.2 2473 54.0
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2446.8 2452 54.3
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 2446.0 2474 53.5
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 2444.5 2478 53.6
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 2442.5 2474 53.7
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 2441.0 2565 53.1
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2436.0 2442 53.9
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2435.2 2461 54.2
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 2432.1 2469 53.7
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 2425.2 2444 53.8
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2424.0 2462 53.9
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 2419.8 2456 53.3
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2419.4 2461 53.8
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2418.7 2449 53.6
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 2417.1 2457 52.9
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 2414.8 2463 53.7
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 2404.0 2453 53.0
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 2399.8 2463 52.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 2394.4 2434 53.2
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 2388.6 2469 52.5
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 2386.7 2449 52.6
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2379.4 2454 52.6
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 2376.3 2447 52.6
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2376.3 2449 52.3
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 2366.3 2461 52.1
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 2365.9 2448 52.4
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 2363.6 2441 52.4
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2361.6 2432 53.4
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 2361.3 2484 51.9
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2360.9 2451 52.5
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 2360.9 2451 52.5
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2359.7 2464 51.7
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 2352.4 2454 52.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2351.2 2454 52.0
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 2350.5 2450 52.0
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2343.9 2462 52.4
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 2339.7 2468 51.9
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2280.4 2454 50.9
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2271.9 2457 51.6
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2270.0 2463 50.7
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2234.9 2041 58.4
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2064.3 2215 51.4
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2026.9 2319 49.2
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2017.7 2202 50.4
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2011.5 1983 54.4
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 1913.7 2530 44.6
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 1912.1 2549 43.4
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 1872.4 1608 61.8
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1811.6 1683 57.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 1811.2 2260 46.8
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1788.5 2191 46.8
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1735.7 2563 40.7
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1723.4 2547 40.9
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1690.2 2507 40.5
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1689.1 1508 59.0
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1655.2 1478 59.0
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1624.0 2228 42.9
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1578.9 1457 58.5
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1521.5 1732 50.0
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1350.5 1618 46.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1313.9 1612 46.2
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1296.6 1008 66.6
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1227.6 1531 46.6
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1161.0 989 62.4
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1088.9 1364 44.4
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.0e-296 1023.8 843 62.4
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 1.0e-287 995.0 980 53.6
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.5e-287 992.3 853 60.0
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 8.5e-287 991.9 1252 45.4
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.2e-286 989.9 983 54.5
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 4.0e-284 983.0 819 61.8
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 3.1e-281 973.4 3323 26.8
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 3.7e-266 923.3 1114 49.0
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 2.5e-209 734.6 925 44.1
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.3e-190 671.0 889 43.9
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 8.2e-181 639.8 441 72.3
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-180 639.4 410 78.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.1e-177 629.4 744 46.0
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 5.2e-167 594.0 704 47.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 2.3e-146 525.4 606 47.4
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.1e-128 465.7 327 69.7
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 5.1e-106 391.3 445 47.4
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 3.3e-105 388.7 271 70.8
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.6e-104 385.2 251 75.3
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.8e-90 339.7 469 42.2
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 3.0e-90 339.0 678 33.3
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-82 313.5 245 62.4
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.9e-81 309.7 557 37.5
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 4.3e-81 308.5 525 38.1
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-78 299.7 625 31.5
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 2.2e-77 296.2 217 70.0
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 7.4e-73 281.2 318 49.4
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 1.7e-72 280.0 248 55.6
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 6.9e-71 274.6 437 40.3
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 2.0e-70 273.1 403 38.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 4.5e-70 271.9 310 49.7
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 5.9e-70 271.6 414 41.1
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 2.2e-69 269.6 343 46.9
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 5.7e-65 255.0 294 48.6
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 5.9e-62 245.0 311 44.4
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 7.2e-52 211.5 155 67.1
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 5.7e-49 201.8 386 32.1
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.0e-45 191.0 347 32.3
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 9.5e-44 184.5 239 39.7
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 7.3e-36 158.3 194 46.4
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-28 134.4 118 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.0e-26 127.9 384 26.0
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.2e-19 104.4 82 62.2
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 4.7e-19 102.4 70 74.3
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 2.3e-18 100.1 91 57.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.7e-16 92.8 64 71.9
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 3.7e-16 92.8 109 45.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.1e-15 91.3 64 70.3
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 2.4e-15 90.1 70 64.3
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.2e-14 87.8 86 50.0
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 6.0e-14 85.5 115 40.9
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.3e-12 79.3 67 56.7
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.0e-09 70.5 80 41.2
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.4e-09 69.3 63 49.2
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 3.8e-08 66.2 45 71.1
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 3.5e-06 59.7 89 38.2


User provided reference genes

Program Settings