Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.6e-198 695.3 367 100.0
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 4.3e-177 624.8 366 90.4
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 2.8e-104 382.9 369 58.8
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 4.6e-99 365.5 367 58.6
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.3e-93 347.4 379 54.1
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 1.7e-88 330.5 382 54.2
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 3.1e-87 326.2 384 51.6
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 7.0e-87 325.1 308 60.7
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 1.0e-85 321.2 318 57.2
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 3.2e-84 316.2 360 54.7
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 3.2e-84 316.2 323 57.6
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 7.2e-84 315.1 300 59.3
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 9.4e-84 314.7 382 51.3
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 2.1e-83 313.5 357 52.1
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.0e-82 311.2 318 57.5
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 1.8e-82 310.5 327 55.7
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 5.2e-82 308.9 317 56.2
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 8.8e-82 308.1 318 57.2
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.2e-81 307.8 308 57.1
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.5e-81 307.4 355 52.1
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.0e-81 307.0 302 57.9
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 2.6e-81 306.6 386 51.0
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.6e-81 306.6 348 52.3
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 9.7e-81 304.7 371 50.1
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.7e-80 303.9 382 51.3
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 2.8e-80 303.1 319 53.6
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 2.8e-80 303.1 370 50.3
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 6.3e-80 302.0 325 55.7
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 6.3e-80 302.0 316 55.7
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 2.4e-79 300.1 318 54.7
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 9.1e-79 298.1 352 52.3
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 3.5e-78 296.2 382 49.2
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.0e-77 294.7 316 53.5
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 2.2e-77 293.5 364 49.7
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 2.9e-77 293.1 303 53.5
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 2.9e-77 293.1 332 54.2
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 3.8e-77 292.7 322 54.7
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 5.0e-77 292.4 319 54.5
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 1.1e-76 291.2 341 49.9
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.1e-76 291.2 309 54.7
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.9e-76 290.4 363 47.7
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 2.5e-76 290.0 309 55.7
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 4.2e-76 289.3 315 55.2
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 9.4e-76 288.1 314 56.4
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 1.2e-75 287.7 321 53.3
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 1.2e-75 287.7 319 55.5
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 4.7e-75 285.8 308 55.5
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 6.1e-75 285.4 311 53.7
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.8e-74 283.9 408 46.8
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 5.2e-74 282.3 312 53.8
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 6.8e-74 282.0 363 47.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.2e-73 281.2 304 55.3
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.2e-73 281.2 319 53.6
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.2e-72 276.9 308 51.9
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 2.8e-72 276.6 335 50.7
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 6.3e-72 275.4 393 47.8
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 8.3e-72 275.0 313 52.4
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 9.1e-71 271.6 311 54.0
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 1.2e-70 271.2 295 52.5
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 1.6e-70 270.8 293 53.2
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.6e-70 270.8 385 45.5
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 2.0e-70 270.4 390 47.7
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 5.9e-70 268.9 328 49.1
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 2.3e-69 266.9 308 51.6
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 6.5e-69 265.4 372 47.3
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 4.7e-67 259.2 310 51.9
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 4.7e-67 259.2 370 46.8
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 5.2e-66 255.8 318 49.1
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.4e-65 252.7 382 45.5
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 5.7e-65 252.3 357 46.2
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 5.7e-65 252.3 357 46.2
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.4e-63 246.9 303 49.2
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 3.1e-63 246.5 349 47.0
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 1.2e-62 244.6 319 49.8
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.0e-62 243.8 357 46.5
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.0e-62 243.8 239 58.2
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 4.5e-62 242.7 317 50.2
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 5.9e-62 242.3 350 46.0
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 5.9e-62 242.3 387 42.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 7.8e-62 241.9 317 50.2
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.7e-61 240.7 318 48.4
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 2.9e-61 240.0 315 50.2
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.9e-60 237.3 307 52.1
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.2e-59 234.6 319 48.9
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 8.0e-59 231.9 361 44.0
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 1.0e-58 231.5 295 47.8
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 5.2e-58 229.2 357 43.1
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.2e-57 228.0 386 44.3
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 9.8e-57 224.9 316 48.7
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 8.3e-56 221.9 246 53.7
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.8e-55 220.7 310 46.1
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 5.4e-55 219.2 359 42.3
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 2.3e-53 213.8 363 41.3
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.9e-52 210.7 308 46.8
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 5.6e-52 209.1 311 46.3
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 7.3e-52 208.8 311 46.0
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.5e-52 208.4 346 42.5
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.7e-51 206.1 346 42.2
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 3.1e-50 203.4 306 44.8
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 1.5e-49 201.1 360 41.7
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.5e-49 201.1 252 49.2
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.5e-49 201.1 253 50.2
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 2.0e-49 200.7 243 53.5
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 9.8e-49 198.4 245 51.0
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 2.9e-48 196.8 276 47.8
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 3.7e-48 196.4 342 43.6
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.4e-47 193.7 281 45.6
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.4e-47 193.7 281 45.6
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 4.1e-47 193.0 254 49.6
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 2.7e-46 190.3 321 42.7
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.0e-45 188.3 323 40.2
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.1e-44 184.9 285 46.0
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 1.6e-43 181.0 316 43.0
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 8.1e-43 178.7 262 43.9
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 2.2e-40 170.6 556 31.7
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.6e-38 164.5 333 39.0
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.7e-37 161.0 152 55.3
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 3.0e-37 160.2 351 35.6
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 2.5e-36 157.1 162 55.6
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 4.0e-34 149.8 392 34.2
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 5.2e-34 149.4 346 36.1
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 7.1e-31 139.0 194 48.5
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 9.2e-31 138.7 295 37.6
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 7.8e-30 135.6 272 37.1
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 5.6e-28 129.4 259 40.9
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 9.0e-26 122.1 214 41.1
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.1e-23 115.2 108 58.3
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.4e-23 114.8 108 58.3
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.4e-23 114.8 248 37.9
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 7.1e-23 112.5 194 44.3
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 8.7e-21 105.5 145 45.5
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 4.6e-14 83.2 47 80.9
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.5e-12 78.2 50 74.0
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.6e-11 74.7 109 38.5
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 4.8e-11 73.2 61 60.7
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 8.1e-11 72.4 297 29.3
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.1e-10 72.0 112 43.8
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 1.2e-09 68.6 75 56.0
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 2.2e-08 64.3 94 44.7
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 7.1e-07 59.3 33 72.7


User provided reference genes

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