Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 0.0e+00 1648.6 864 100.0
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 0.0e+00 1323.5 890 79.6
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1306.6 887 78.7
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 0.0e+00 1299.3 884 79.1
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1299.3 878 79.4
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1294.3 878 79.3
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1293.1 892 78.8
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 0.0e+00 1283.5 896 78.5
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 0.0e+00 1281.2 875 78.2
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 0.0e+00 1280.0 885 77.5
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 0.0e+00 1274.6 885 77.9
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 0.0e+00 1267.3 880 77.0
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1266.9 890 77.5
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 0.0e+00 1256.9 885 76.2
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 0.0e+00 1251.5 886 76.4
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 0.0e+00 1249.2 906 75.3
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 0.0e+00 1249.2 899 75.4
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 0.0e+00 1247.6 886 76.5
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 0.0e+00 1240.7 950 71.9
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 0.0e+00 1234.9 890 75.3
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 0.0e+00 1234.2 892 75.4
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1232.2 906 74.5
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 0.0e+00 1231.9 886 76.1
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 0.0e+00 1231.1 900 74.4
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 0.0e+00 1231.1 885 75.5
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 0.0e+00 1229.2 893 75.5
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1228.8 899 74.5
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 0.0e+00 1228.4 882 76.3
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 0.0e+00 1228.0 901 74.4
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1224.2 910 73.6
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 0.0e+00 1223.8 902 74.4
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 0.0e+00 1221.5 893 74.4
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 0.0e+00 1221.5 892 73.9
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 0.0e+00 1220.3 891 74.0
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 0.0e+00 1220.3 892 74.0
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 0.0e+00 1219.1 891 74.4
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1217.6 889 74.2
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 0.0e+00 1215.7 900 74.2
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 0.0e+00 1213.7 906 73.5
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 0.0e+00 1210.7 898 74.2
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1210.7 921 72.6
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1209.9 900 73.2
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 0.0e+00 1209.5 900 73.2
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1207.2 885 74.1
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1206.4 900 72.9
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 0.0e+00 1206.0 829 77.8
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 0.0e+00 1206.0 887 73.8
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 0.0e+00 1203.7 897 73.4
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 0.0e+00 1203.0 897 72.6
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 0.0e+00 1200.7 969 69.5
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 0.0e+00 1199.1 902 72.5
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 0.0e+00 1199.1 896 73.4
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 0.0e+00 1196.8 885 73.2
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 0.0e+00 1196.0 896 72.9
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1196.0 885 73.4
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 0.0e+00 1192.6 896 72.5
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 0.0e+00 1187.6 886 72.3
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1185.6 845 75.1
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 0.0e+00 1183.7 910 71.3
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 0.0e+00 1183.3 920 69.8
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 0.0e+00 1182.9 899 71.3
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 0.0e+00 1182.5 886 72.9
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 0.0e+00 1181.4 899 71.2
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 0.0e+00 1181.4 886 72.8
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 0.0e+00 1181.4 886 72.8
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 0.0e+00 1180.2 899 71.2
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 0.0e+00 1179.9 894 72.3
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 0.0e+00 1175.6 899 71.3
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 0.0e+00 1174.1 899 71.0
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1173.7 896 71.4
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 0.0e+00 1172.9 901 71.0
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1170.6 895 71.4
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1170.2 897 70.7
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 0.0e+00 1170.2 884 72.3
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1169.8 901 71.0
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1165.6 891 71.0
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 0.0e+00 1162.9 895 70.7
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1162.5 895 70.7
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 0.0e+00 1162.1 906 70.5
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 0.0e+00 1161.7 890 71.2
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 0.0e+00 1161.4 888 71.5
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1159.4 895 70.7
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 0.0e+00 1158.3 889 71.0
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 0.0e+00 1155.6 929 68.5
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 0.0e+00 1153.3 919 69.0
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1145.6 880 71.4
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1134.0 887 70.7
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1113.6 961 65.6
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 0.0e+00 1110.5 910 68.6
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1110.1 910 68.7
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1105.5 933 67.2
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 0.0e+00 1102.4 717 79.6
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1093.2 902 67.3
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1078.2 825 72.8
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.9e-293 1011.9 882 61.5
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 6.3e-288 994.2 757 72.1
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 1.8e-287 992.6 879 61.5
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 9.1e-287 990.3 681 75.9
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 2.2e-285 985.7 880 59.8
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 7.5e-273 944.1 810 65.4
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 8.8e-266 920.6 582 83.0
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 1.4e-258 896.7 737 65.1
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 2.4e-239 832.8 558 78.5
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 2.1e-235 819.7 536 81.2
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.1e-220 770.8 552 74.3
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 4.9e-216 755.4 544 76.7
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 4.9e-192 675.6 613 61.8
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.3e-189 666.8 557 62.3
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.3e-179 634.4 409 81.9
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 1.2e-177 627.9 410 80.5
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 8.5e-168 595.1 473 68.9
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 3.6e-158 563.1 328 86.9
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 5.9e-153 545.8 443 68.4
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 3.0e-149 533.5 512 60.7
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 3.8e-144 516.5 298 87.9
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 5.5e-143 512.7 471 62.2
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 7.5e-140 502.3 431 65.0
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 1.4e-122 444.9 407 63.1
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.2e-118 431.8 248 88.7
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 8.9e-117 425.6 288 73.6
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 1.1e-101 375.6 299 69.9
RcHm_v2.0_Chr4g0384821 Rosa chinensis HOM05D003771 ORTHO05D004396 7.1e-98 362.8 219 83.1
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 3.0e-88 330.9 203 83.3
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.1e-79 302.4 288 63.2
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.4e-77 294.7 315 55.6
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.4e-77 294.7 315 55.6
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 2.6e-76 291.2 235 65.5
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.4e-74 285.4 274 63.1
Zm00001eb307240 Zea mays HOM05D003771 ORTHO05D004396 9.3e-74 282.7 169 83.4
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 3.9e-72 277.3 309 53.7
Zm00001eb154330 Zea mays HOM05D003771 ORTHO05D004396 6.3e-62 243.4 142 87.3
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.2e-52 212.6 184 58.2
Solyc05g025750.3 Solanum lycopersicum HOM05D003771 ORTHO05D004396 1.2e-49 202.6 209 62.7
unitig_899.g15420 Utricularia gibba HOM05D003771 ORTHO05D004396 1.2e-49 202.6 209 59.3
Peaxi162Scf00322g01516 Petunia axillaris HOM05D003771 ORTHO05D004396 2.6e-47 194.9 207 60.9
TAR633G1498 Trochodendron aralioides HOM05D003771 ORTHO05D004396 2.0e-44 185.3 126 83.3
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-42 177.9 167 57.5
COL.COLO4_38524 Corchorus olitorius HOM05D003771 ORTHO05D004396 6.7e-40 170.2 142 66.9
Lsat_1_v5_gn_8_70001 Lactuca sativa HOM05D003771 ORTHO05D004396 2.2e-35 155.2 207 50.2
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 4.7e-33 147.5 424 29.2
Oeu036959.1 Olea europaea HOM05D003771 ORTHO05D004396 8.0e-33 146.7 132 68.2
Psat0s1568g0040 Pisum sativum HOM05D003771 ORTHO05D004396 1.0e-32 146.4 90 84.4
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 1.4e-32 146.0 104 72.1
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 4.0e-32 144.4 155 60.0
FAN12G3555 Fragaria x ananassa HOM05D003771 ORTHO05D004396 5.2e-32 144.1 97 72.2
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 6.8e-32 143.7 138 57.2
CDE06G2293 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 3.1e-29 134.8 79 94.9
arahy.Tifrunner.gnm1.ann1.523GVR Arachis hypogaea HOM05D003771 ORTHO05D004396 1.2e-28 132.9 93 67.7
arahy.Tifrunner.gnm1.ann1.Q9DYE1 Arachis hypogaea HOM05D003771 ORTHO05D004396 1.1e-26 126.3 85 69.4
Lsat_1_v5_gn_5_155680 Lactuca sativa HOM05D003771 ORTHO05D004396 1.1e-26 126.3 120 60.8
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 1.6e-25 122.5 74 78.4
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 7.8e-20 103.6 91 60.4
arahy.Tifrunner.gnm1.ann1.F6FNE6 Arachis hypogaea HOM05D003771 ORTHO05D004396 4.3e-18 97.8 70 64.3
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.1e-17 95.5 73 68.5
Psat3g071280 Pisum sativum HOM05D000062 ORTHO05D004396 3.6e-17 94.7 91 58.2
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 1.4e-16 92.8 76 61.8
Psat5g077000 Pisum sativum HOM05D000062 ORTHO05D004396 3.1e-16 91.7 91 56.0
Psat0ss6263g0280 Pisum sativum HOM05D041104 ORTHO05D004396 5.2e-16 90.9 89 58.4
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 6.8e-16 90.5 53 84.9
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 3.7e-14 84.7 101 51.5
Lsat_1_v5_gn_7_78841 Lactuca sativa HOM05D003771 ORTHO05D004396 1.1e-13 83.2 196 37.8
MBI05_g48085_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 2.4e-13 82.0 62 66.1
MCO15G147 Micromonas commoda HOM05D003771 ORTHO05D004396 5.4e-13 80.9 379 27.7
MD07G1055400 Malus domestica HOM05D003771 ORTHO05D004396 3.0e-11 75.1 40 95.0
MBI14_g31102_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D012924 4.3e-10 71.2 51 68.6
MBI05_g23486_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.2e-09 69.7 49 75.5
Cre08.g384864 Chlamydomonas reinhardtii HOM05D003771 ORTHO05D004396 1.2e-07 63.2 125 31.2
Zm00001eb236470 Zea mays HOM05D003771 ORTHO05D004396 5.8e-07 60.8 72 50.0
Os03g0265666 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 9.8e-07 60.1 95 49.5
Zm00001eb164270 Zea mays HOM05D003771 ORTHO05D004396 1.7e-06 59.3 72 48.6
Zm00001eb086760 Zea mays HOM05D003771 ORTHO05D004396 4.9e-06 57.8 33 81.8


User provided reference genes

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