Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 0.0e+00 1285.4 650 100.0
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 0.0e+00 1077.4 651 85.9
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 1.6e-49 201.8 247 46.2
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.2e-46 192.2 390 35.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.2e-43 181.4 319 39.5
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 4.9e-35 153.7 231 41.1
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 1.0e-32 146.0 558 29.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 3.9e-32 144.1 226 39.8
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 8.7e-32 142.9 247 38.1
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 8.7e-32 142.9 233 38.6
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 8.7e-32 142.9 233 38.6
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.3e-31 141.0 363 32.0
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 5.6e-31 140.2 240 40.0
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.3e-30 139.0 356 32.3
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 6.2e-30 136.7 318 33.6
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 8.1e-30 136.3 230 38.7
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 2.4e-29 134.8 228 38.2
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.1e-29 134.4 318 33.6
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 3.1e-29 134.4 433 28.2
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 5.3e-29 133.7 439 28.7
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 5.3e-29 133.7 422 32.9
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.2e-28 132.5 318 33.3
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 2.2e-27 128.3 228 37.3
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 2.9e-27 127.9 240 37.9
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 6.4e-27 126.7 439 28.7
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 6.4e-27 126.7 231 37.7
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 4.2e-26 124.0 181 39.2
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 4.2e-26 124.0 220 37.7
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.2e-25 122.5 203 38.9
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.6e-25 122.1 349 30.7
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 2.1e-25 121.7 234 37.6
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 2.7e-25 121.3 375 29.9
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 2.7e-25 121.3 327 28.4
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.5e-25 120.9 243 36.6
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.5e-25 120.9 233 37.8
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 4.6e-25 120.6 251 35.5
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 4.6e-25 120.6 252 35.3
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 6.0e-25 120.2 242 36.8
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 7.9e-25 119.8 242 36.8
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.0e-24 119.4 319 32.9
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.8e-24 118.6 402 30.1
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 3.0e-24 117.9 264 34.8
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.0e-24 117.9 233 36.5
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 8.7e-24 116.3 435 29.7
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 8.7e-24 116.3 248 36.7
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.1e-23 115.9 362 29.6
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 1.5e-23 115.5 224 36.2
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.5e-23 115.5 335 32.2
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.9e-23 115.2 234 35.0
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.5e-23 114.8 227 34.8
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 9.6e-23 112.8 261 33.3
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.3e-22 112.5 427 28.1
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.3e-22 112.5 243 35.4
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 3.7e-22 110.9 526 26.2
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.7e-22 110.9 225 33.8
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 4.8e-22 110.5 239 35.6
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.1e-22 109.8 224 37.1
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.4e-21 109.0 271 34.3
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 6.9e-21 106.7 341 30.2
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 2.6e-20 104.8 263 33.8
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 3.4e-20 104.4 355 29.6
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 5.8e-20 103.6 209 36.8
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.3e-19 102.4 422 28.2
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.7e-19 102.1 226 33.2
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 2.9e-19 101.3 446 29.1
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 2.9e-19 101.3 406 28.8
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 2.9e-19 101.3 348 31.3
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 8.4e-19 99.8 241 34.4
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 8.4e-19 99.8 231 34.6
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 8.4e-19 99.8 249 30.5
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.4e-18 99.0 231 33.3
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.4e-18 99.0 263 31.6
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.9e-18 98.6 252 30.6
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 7.1e-18 96.7 280 31.8
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 7.1e-18 96.7 246 32.5
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 7.1e-18 96.7 246 32.5
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 7.1e-18 96.7 246 32.5
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 9.3e-18 96.3 246 32.5
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 9.3e-18 96.3 235 34.5
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.2e-17 95.9 244 32.0
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.2e-17 95.9 233 31.3
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.6e-17 95.5 224 33.9
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.1e-17 95.1 220 31.4
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 2.7e-17 94.7 246 32.5
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 3.5e-17 94.4 195 35.9
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.3e-16 92.4 232 32.8
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.3e-16 92.4 142 39.4
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.8e-16 92.0 232 31.0
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.8e-16 92.0 200 35.5
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 2.3e-16 91.7 231 32.5
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.0e-16 91.3 222 33.3
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 3.9e-16 90.9 277 30.0
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 3.9e-16 90.9 237 30.0
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 3.9e-16 90.9 355 28.7
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 5.1e-16 90.5 231 30.3
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 5.1e-16 90.5 231 30.3
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 8.7e-16 89.7 231 31.2
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.9e-15 88.6 499 26.5
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 4.3e-15 87.4 363 28.4
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.3e-15 87.4 499 26.5
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 5.7e-15 87.0 237 29.5
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 7.4e-15 86.7 195 30.3
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.3e-14 85.9 458 25.3
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.1e-14 85.1 238 30.7
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 3.7e-14 84.3 231 32.9
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 3.7e-14 84.3 401 23.9
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 8.2e-14 83.2 414 25.1
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.1e-13 82.8 414 25.1
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 1.4e-13 82.4 360 25.6
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.4e-13 82.4 244 29.1
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 3.1e-13 81.3 145 35.2
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 1.5e-12 79.0 295 26.8
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.6e-12 78.2 218 28.0
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.3e-11 75.9 218 29.4
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.2e-11 75.1 461 24.1
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 3.8e-11 74.3 117 40.2
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 6.5e-11 73.6 305 27.5
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 2.5e-10 71.6 445 25.8
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 3.2e-10 71.2 202 30.7
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 4.8e-06 57.4 152 27.6
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 6.3e-06 57.0 232 26.7


User provided reference genes

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