Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 0.0e+00 1330.9 717 100.0
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 0.0e+00 1077.0 735 79.5
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 2.8e-310 1068.1 736 78.1
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 4.1e-309 1064.3 736 78.5
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 9.1e-309 1063.1 738 79.0
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 1.0e-307 1059.7 732 78.0
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 1.7e-307 1058.9 731 78.7
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 3.8e-307 1057.7 726 78.9
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 5.0e-307 1057.4 724 78.6
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 6.5e-307 1057.0 737 77.9
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 8.6e-307 1056.6 738 77.1
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 8.6e-307 1056.6 724 78.6
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 1.5e-306 1055.8 736 77.7
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 4.2e-306 1054.3 736 77.6
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 1.6e-305 1052.4 727 78.0
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 2.1e-305 1052.0 738 77.4
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 2.3e-304 1048.5 736 77.6
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 6.8e-304 1047.0 737 77.5
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 6.8e-304 1047.0 735 77.4
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 2.6e-303 1045.0 734 77.1
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 4.4e-303 1044.3 737 77.2
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 4.4e-303 1044.3 730 77.8
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 5.7e-303 1043.9 723 77.5
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 7.5e-303 1043.5 737 76.9
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.7e-302 1042.3 737 76.7
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 1.7e-302 1042.3 737 76.7
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 2.2e-302 1042.0 737 76.8
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 3.7e-302 1041.2 738 77.0
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 1.1e-301 1039.6 730 77.7
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.8e-301 1038.9 737 76.4
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 2.4e-301 1038.5 730 77.1
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 3.1e-301 1038.1 740 76.6
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 7.0e-301 1036.9 738 76.4
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 1.2e-300 1036.2 747 75.4
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 1.6e-300 1035.8 730 77.0
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.6e-300 1035.8 730 77.0
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 1.6e-300 1035.8 733 76.9
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 3.5e-300 1034.6 730 76.8
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 7.8e-300 1033.5 750 73.3
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 1.0e-299 1033.1 739 76.0
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.7e-299 1032.3 730 76.7
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 5.0e-299 1030.8 730 76.7
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 6.6e-299 1030.4 760 74.6
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 1.5e-298 1029.2 738 75.7
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 1.9e-298 1028.9 736 76.5
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 3.3e-298 1028.1 757 74.0
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 2.1e-297 1025.4 723 76.1
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 3.6e-297 1024.6 725 76.3
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 4.7e-297 1024.2 732 76.2
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 1.0e-296 1023.1 734 75.3
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 1.8e-296 1022.3 726 75.8
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 2.3e-296 1021.9 727 76.9
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 6.8e-296 1020.4 736 75.5
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 2.0e-295 1018.8 750 73.1
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 2.6e-295 1018.5 739 74.7
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 5.7e-295 1017.3 745 75.3
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 1.3e-294 1016.1 737 74.8
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.2e-294 1015.4 730 75.5
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 1.1e-293 1013.1 742 74.4
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 1.8e-293 1012.3 730 75.3
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 5.4e-293 1010.7 737 74.8
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 7.0e-293 1010.4 784 72.1
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 2.7e-292 1008.4 827 68.4
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.0e-291 1006.5 730 73.0
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 1.0e-291 1006.5 724 75.3
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 1.7e-291 1005.7 833 66.6
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 5.0e-291 1004.2 730 72.9
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 1.9e-290 1002.3 805 68.6
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 2.5e-290 1001.9 724 75.4
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 5.6e-290 1000.7 806 69.7
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 5.6e-290 1000.7 725 75.9
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 9.5e-290 1000.0 741 74.0
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 1.2e-289 999.6 731 74.7
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 1.2e-289 999.6 731 74.7
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 2.8e-289 998.4 730 74.5
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 1.1e-288 996.5 724 75.0
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 1.8e-288 995.7 724 74.7
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 2.3e-288 995.3 724 75.3
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 4.0e-288 994.6 730 74.1
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 2.0e-287 992.3 724 74.7
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 5.8e-287 990.7 718 75.5
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 7.5e-287 990.3 743 73.2
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 7.5e-287 990.3 743 73.2
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 9.8e-287 989.9 724 74.7
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 2.9e-286 988.4 724 74.4
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 2.9e-286 988.4 727 71.3
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 4.9e-286 987.6 730 73.8
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 2.4e-285 985.3 730 73.6
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 3.2e-285 984.9 741 73.4
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 3.2e-285 984.9 723 73.9
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 3.2e-285 984.9 737 73.3
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 5.4e-285 984.2 738 73.2
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 1.2e-284 983.0 724 71.8
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 2.0e-284 982.2 723 74.1
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 6.0e-284 980.7 724 74.2
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 7.8e-284 980.3 724 73.8
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 1.0e-283 979.9 736 72.3
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 2.3e-283 978.8 739 72.9
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 2.5e-282 975.3 748 71.4
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 2.5e-282 975.3 724 72.0
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 9.5e-282 973.4 724 73.9
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 9.5e-282 973.4 748 71.5
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 8.9e-280 966.8 742 71.0
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 9.9e-279 963.4 742 70.9
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 1.1e-277 959.9 723 72.9
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 2.4e-277 958.7 706 72.0
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 3.2e-277 958.4 726 73.4
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 7.1e-277 957.2 738 70.2
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 1.1e-274 949.9 667 77.4
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 5.2e-272 941.0 700 71.3
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 5.8e-271 937.6 687 74.2
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 1.1e-269 933.3 730 69.3
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 1.4e-269 932.9 783 66.9
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 2.8e-265 918.7 736 69.0
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.4e-264 915.6 751 67.1
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 3.0e-259 898.7 744 65.3
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 3.0e-259 898.7 744 65.3
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 8.1e-257 890.6 724 68.9
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 4.5e-255 884.8 760 64.2
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.9e-253 879.4 586 80.2
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 5.4e-253 877.9 724 68.1
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 2.4e-245 852.4 726 64.5
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 3.2e-245 852.0 535 84.5
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 1.2e-244 850.1 713 67.7
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 1.3e-241 840.1 724 63.4
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 1.3e-241 840.1 733 62.9
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 4.5e-239 831.6 735 62.7
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 1.3e-238 830.1 725 63.3
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 2.5e-234 815.8 674 68.4
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 8.2e-233 810.8 517 83.8
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 2.4e-232 809.3 660 68.3
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 8.5e-230 800.8 733 60.7
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 1.6e-228 796.6 730 61.8
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 3.6e-228 795.4 701 64.8
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 3.7e-225 785.4 733 61.8
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 1.0e-222 777.3 746 57.2
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 2.4e-208 729.6 596 68.3
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 5.7e-202 708.4 742 57.1
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.2e-194 684.1 743 56.5
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 2.8e-185 652.9 783 50.6
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 6.3e-185 651.7 722 54.8
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 2.3e-174 616.7 635 56.7
Pp3c17_2120 Physcomitrium patens HOM05D003568 ORTHO05D004104 2.2e-161 573.5 725 47.4
Solyc10g019110.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 4.0e-155 552.7 563 56.7
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 5.8e-154 548.9 473 63.2
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 7.1e-152 542.0 743 47.4
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 2.8e-148 530.0 521 60.1
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 7.6e-146 521.9 467 62.1
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 7.1e-144 515.4 443 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1439 Anthoceros agrestis HOM05D003568 ORTHO05D004104 3.5e-143 513.1 763 42.7
PSO478G4032 Papaver somniferum HOM05D003568 ORTHO05D004104 1.3e-126 458.0 481 55.7
Dinv09575 Davidia involucrata HOM05D003568 ORTHO05D004104 2.3e-126 457.2 284 82.4
Pp3c10_23750 Physcomitrium patens HOM05D003568 ORTHO05D004104 4.5e-122 443.0 718 39.3
Sopen00g004930 Solanum pennellii HOM05D003568 ORTHO05D004104 2.4e-83 314.3 365 52.6
CAN.G77.8 Capsicum annuum HOM05D003568 ORTHO05D004104 7.7e-82 309.3 291 65.6
Ah.12g059250 Amaranthus hybridus HOM05D003568 ORTHO05D004104 1.6e-74 285.0 280 58.2
Hma1.2p1_0335F.1_g128910 Hydrangea macrophylla HOM05D003568 ORTHO05D004104 7.5e-61 239.6 156 76.3
Psat3g201360 Pisum sativum HOM05D003568 ORTHO05D004104 7.8e-50 203.0 184 69.0
Solyc10g019130.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.6e-39 168.7 127 72.4
PRCOL_00002354 Prasinoderma coloniale HOM05D003568 ORTHO05D004104 3.4e-37 161.0 731 26.1
Haze_19031 Corylus avellana HOM05D003568 ORTHO05D004104 5.8e-37 160.2 194 53.1
SEGI_22298 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 3.1e-30 137.9 87 74.7
SEGI_20614 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 6.9e-30 136.7 153 52.9
CDE06G2354 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 1.5e-29 135.6 89 77.5
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 1.5e-24 119.0 141 51.8
Oeu015217.1 Olea europaea HOM05D003568 ORTHO05D004104 2.5e-24 118.2 63 92.1
Ah.12g059260 Amaranthus hybridus HOM05D003568 ORTHO05D004104 3.6e-23 114.4 62 88.7
Haze_11234 Corylus avellana HOM05D001460 ORTHO05D001337 3.6e-23 114.4 173 47.4
ClCG05G001230 Citrullus lanatus HOM05D003568 ORTHO05D004104 1.4e-22 112.5 106 59.4
RcHm_v2.0_Chr1g0375581 Rosa chinensis HOM05D003568 ORTHO05D004104 6.9e-22 110.2 94 63.8
VMungo1383G1077 Vigna mungo HOM05D003568 ORTHO05D004104 1.2e-21 109.4 82 67.1
Solyc10g019100.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 2.9e-20 104.8 62 82.3
MCO10G270 Micromonas commoda HOM05D003568 ORTHO05D004104 3.5e-18 97.8 208 36.1
Cre12.g551801 Chlamydomonas reinhardtii HOM05D003568 ORTHO05D004104 1.3e-12 79.3 194 27.3
RcHm_v2.0_Chr1g0375661 Rosa chinensis HOM05D003568 ORTHO05D004104 6.5e-12 77.0 100 49.0
Solyc10g019120.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 6.5e-12 77.0 61 63.9
RcHm_v2.0_Chr1g0375651 Rosa chinensis HOM05D003568 ORTHO05D004104 9.3e-11 73.2 107 44.9
HanXRQChr14g0445661 Helianthus annuus HOM05D003568 ORTHO05D004104 3.0e-09 68.2 51 64.7
SalBow5G2358 Salvia bowleyana HOM05D019231 ORTHO05D004104 3.3e-08 64.7 39 76.9
SalBow4G2543 Salvia bowleyana HOM05D003568 ORTHO05D004104 4.3e-08 64.3 39 76.9
QL05p039330 Quercus lobata HOM05D003568 ORTHO05D004104 3.1e-06 58.2 53 64.2
RcHm_v2.0_Chr1g0375601 Rosa chinensis HOM05D003568 ORTHO05D004104 3.1e-06 58.2 56 55.4


User provided reference genes

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