Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 4.0e-159 564.7 282 100.0
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.0e-106 390.6 342 65.5
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.3e-68 262.3 278 53.2
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 6.4e-64 248.4 364 44.2
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 3.2e-63 246.1 264 52.7
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 9.2e-63 244.6 304 47.4
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.2e-62 244.2 289 50.5
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.6e-62 243.8 336 44.3
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.0e-62 243.4 325 45.8
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 6.0e-62 241.9 333 43.2
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 7.8e-62 241.5 344 45.1
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 7.8e-62 241.5 277 48.0
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 7.8e-62 241.5 345 43.2
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.7e-61 240.4 279 49.1
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.3e-61 240.0 260 51.2
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.3e-61 240.0 260 51.2
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 3.0e-61 239.6 277 49.1
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.0e-61 239.6 295 47.8
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.0e-61 238.8 283 50.9
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 5.0e-61 238.8 276 49.3
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 5.0e-61 238.8 289 49.1
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 6.6e-61 238.4 258 50.4
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 6.6e-61 238.4 336 43.2
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.5e-60 237.3 282 49.6
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.9e-60 236.9 342 43.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.9e-60 236.9 287 46.7
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.5e-60 236.5 283 47.7
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.5e-60 236.5 285 49.5
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.5e-60 236.5 344 43.3
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 3.3e-60 236.1 297 45.5
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 3.3e-60 236.1 279 49.5
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 3.3e-60 236.1 273 48.7
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 3.3e-60 236.1 344 43.9
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.3e-60 235.7 279 48.4
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 4.3e-60 235.7 341 44.3
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 5.6e-60 235.3 273 48.4
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 9.5e-60 234.6 276 47.8
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 9.5e-60 234.6 270 48.9
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 1.2e-59 234.2 287 48.4
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.6e-59 233.8 275 48.7
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.6e-59 233.8 277 49.1
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 2.8e-59 233.0 283 47.0
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 2.8e-59 233.0 277 48.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 2.8e-59 233.0 272 49.6
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.7e-59 232.3 346 43.1
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.7e-59 232.3 283 46.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 6.2e-59 231.9 253 53.0
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 8.1e-59 231.5 279 48.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 8.1e-59 231.5 275 49.1
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.1e-58 231.1 343 44.3
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.1e-58 231.1 330 44.2
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 1.4e-58 230.7 289 47.8
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.1e-58 229.6 344 43.9
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.0e-58 229.2 345 43.2
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 4.0e-58 229.2 269 47.2
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 6.8e-58 228.4 285 46.7
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 6.8e-58 228.4 290 48.3
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 8.9e-58 228.0 291 47.1
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.2e-57 227.6 357 42.9
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.6e-57 226.5 284 45.4
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.6e-57 226.5 284 45.4
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.6e-57 226.5 284 45.4
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.6e-57 226.5 285 46.7
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 3.4e-57 226.1 350 41.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 5.8e-57 225.3 285 46.3
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 7.5e-57 224.9 278 47.8
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.3e-56 224.2 278 48.6
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 4.9e-56 222.2 267 46.1
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 6.4e-56 221.9 267 47.9
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 6.4e-56 221.9 255 50.2
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.1e-55 221.1 272 47.8
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.1e-55 221.1 288 46.5
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 2.4e-55 219.9 342 41.5
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 4.1e-55 219.2 263 48.7
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 4.1e-55 219.2 276 44.9
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 5.4e-55 218.8 261 47.1
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 7.1e-55 218.4 258 48.1
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.1e-54 216.9 292 46.2
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 3.5e-54 216.1 291 44.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.9e-53 212.6 280 45.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.1e-52 211.1 325 41.2
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.5e-52 210.7 258 45.7
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 7.3e-52 208.4 261 46.7
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.1e-50 204.5 257 42.8
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.1e-50 204.5 257 44.7
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.4e-50 204.1 279 44.1
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.1e-50 203.0 258 43.0
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.1e-50 203.0 258 43.0
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 4.0e-50 202.6 273 44.3
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.6e-49 199.9 265 44.2
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.4e-49 199.5 261 42.1
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.2e-47 193.0 262 44.3
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.2e-47 193.0 261 41.0
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.6e-46 189.1 241 47.3
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.6e-45 184.9 257 42.0
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.1e-44 184.5 274 43.1
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.5e-44 184.1 260 41.5
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 4.3e-44 182.6 253 41.9
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 5.6e-44 182.2 276 43.5
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 7.3e-44 181.8 253 41.9
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 9.6e-44 181.4 253 41.9
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.6e-43 180.6 231 45.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.7e-43 179.1 265 40.8
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 2.4e-42 176.8 255 39.2
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.4e-42 176.8 255 39.2
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.2e-42 175.6 231 45.5
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.2e-41 174.5 218 45.0
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 2.2e-40 170.2 256 40.6
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.4e-40 168.3 253 40.7
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 3.2e-39 166.4 254 39.8
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.2e-39 166.0 255 37.6
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.2e-39 166.0 255 37.6
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-38 164.5 258 36.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 2.7e-38 163.3 255 36.9
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.5e-38 162.9 274 38.7
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 6.0e-38 162.2 259 38.6
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 7.8e-38 161.8 259 38.6
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.0e-37 161.4 229 41.5
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-37 161.0 259 38.2
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.3e-37 160.2 247 38.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.3e-37 160.2 269 37.2
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.3e-37 160.2 232 41.4
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-37 159.8 247 38.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 8.7e-37 158.3 259 37.8
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 2.5e-36 156.8 239 39.7
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.3e-36 156.4 200 48.5
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-35 154.5 232 39.2
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 8.1e-35 151.8 235 40.4
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.4e-34 151.0 183 51.9
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 3.1e-34 149.8 252 36.9
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.0e-33 147.1 135 59.3
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 3.4e-33 146.4 261 36.0
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 2.4e-31 140.2 390 29.0
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.1e-31 138.7 256 36.7
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.6e-30 136.0 250 38.0
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-29 132.9 227 39.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 8.7e-29 131.7 237 36.3
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.9e-28 130.6 125 52.0
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 9.6e-28 128.3 230 36.1
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 8.1e-27 125.2 126 50.8
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.8e-26 124.0 104 60.6
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-24 117.1 248 33.5
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 8.4e-24 115.2 110 54.5
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.9e-23 114.0 92 63.0
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.6e-22 109.4 85 65.9
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.0e-22 109.0 86 66.3
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.9e-21 106.3 106 50.9
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.1e-21 105.9 106 51.9
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 4.3e-20 102.8 86 54.7
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 9.6e-20 101.7 87 54.0
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.8e-19 99.4 111 44.1
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 2.6e-17 93.6 195 33.3
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.0e-16 91.7 86 50.0
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.9e-16 90.1 81 58.0
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.9e-15 87.4 125 44.8
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 7.4e-12 75.5 44 77.3
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.3e-11 74.7 54 57.4
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 5.3e-10 69.3 246 25.6
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.6e-09 67.0 204 27.0
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 3.4e-09 66.6 54 51.9
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 3.8e-08 63.2 98 37.8
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.5e-07 59.3 67 47.8
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.3e-07 58.5 35 74.3
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 2.1e-06 57.4 64 46.9


User provided reference genes

Program Settings