Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0946 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 1.1e-292 1009.2 498 100.0
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 6.6e-274 946.8 494 94.5
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 3.7e-192 675.2 502 67.3
Dinv27164 Davidia involucrata HOM05D001235 ORTHO05D005684 1.8e-191 672.9 498 67.9
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.0e-189 667.2 498 66.7
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 1.3e-189 666.8 501 66.5
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 2.9e-189 665.6 503 66.0
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 5.0e-189 664.8 498 66.5
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 6.6e-189 664.5 497 66.0
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 6.6e-189 664.5 509 67.2
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 1.1e-188 663.7 504 66.9
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 9.5e-188 660.6 500 65.8
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 6.2e-187 657.9 498 65.7
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 8.0e-187 657.5 505 66.3
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 8.0e-187 657.5 500 66.4
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 1.0e-186 657.1 504 66.1
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 1.4e-186 656.8 504 64.7
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.8e-186 656.4 496 65.1
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 1.8e-186 656.4 499 65.7
Hund19034 Selenicereus undatus HOM05D001235 ORTHO05D005684 1.8e-186 656.4 505 64.4
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 2.3e-186 656.0 504 66.5
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 3.1e-186 655.6 498 66.1
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 6.8e-186 654.4 496 64.7
vmacro20797 Vaccinium macrocarpon HOM05D001235 ORTHO05D005684 6.8e-186 654.4 504 66.3
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 1.5e-185 653.3 502 65.5
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 3.4e-185 652.1 496 64.9
Rhsim01G0114000 Rhododendron simsii HOM05D001235 ORTHO05D005684 3.4e-185 652.1 505 65.9
Gohir.A10G133100 Gossypium hirsutum HOM05D001235 ORTHO05D005684 5.8e-185 651.4 498 65.3
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 9.8e-185 650.6 496 64.7
Aqoxy5G00036 Aquilegia oxysepala HOM05D001235 ORTHO05D005684 1.3e-184 650.2 504 65.3
Hma1.2p1_0349F.1_g132360 Hydrangea macrophylla HOM05D001235 ORTHO05D005684 1.7e-184 649.8 500 66.2
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 1.7e-184 649.8 492 65.4
VMungo0720G0937 Vigna mungo HOM05D001235 ORTHO05D005684 2.2e-184 649.4 502 63.7
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 4.9e-184 648.3 499 63.9
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 6.4e-184 647.9 506 64.2
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 8.3e-184 647.5 498 65.3
ATR0686G153 Amborella trichopoda HOM05D001235 ORTHO05D005684 5.4e-183 644.8 508 65.0
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 2.7e-182 642.5 498 65.1
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 6.0e-182 641.3 520 64.0
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 1.7e-181 639.8 504 64.3
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 3.9e-181 638.6 500 64.0
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 3.9e-181 638.6 500 63.0
Lj6C311G3 Lonicera japonica HOM05D001235 ORTHO05D005684 1.1e-180 637.1 499 63.5
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 1.1e-180 637.1 506 62.1
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 5.6e-180 634.8 505 61.6
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 6.2e-179 631.3 507 62.3
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 6.2e-179 631.3 507 62.3
HanXRQChr01g0021711 Helianthus annuus HOM05D001235 ORTHO05D005684 1.1e-178 630.6 504 62.1
Lsat_1_v5_gn_1_69940 Lactuca sativa HOM05D001235 ORTHO05D005684 1.4e-178 630.2 508 60.6
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 5.2e-178 628.2 505 63.8
PSO170G5672 Papaver somniferum HOM05D001235 ORTHO05D005684 6.8e-178 627.9 511 64.2
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 8.9e-178 627.5 503 62.4
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 1.2e-177 627.1 502 63.9
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 2.0e-177 626.3 511 60.7
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 3.4e-177 625.5 511 60.3
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 4.4e-177 625.2 508 61.4
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 5.8e-177 624.8 524 62.0
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 7.5e-177 624.4 513 60.0
Phvul.007G001400 Phaseolus vulgaris HOM05D001235 ORTHO05D005684 9.8e-177 624.0 503 61.2
THA.LOC104818773 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 1.3e-176 623.6 497 62.4
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 2.2e-176 622.9 504 61.1
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 3.7e-176 622.1 508 61.0
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 1.1e-175 620.5 512 63.7
MSTRG.22434 Avicennia marina HOM05D001235 ORTHO05D005684 9.2e-175 617.5 506 62.6
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 9.2e-175 617.5 509 61.3
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.6e-174 616.7 498 61.8
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 3.5e-174 615.5 507 61.9
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 4.6e-174 615.1 520 60.2
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 6.0e-174 614.8 498 61.6
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 3.9e-173 612.1 510 61.4
Glyma.10G298000 Glycine max HOM05D001235 ORTHO05D005684 5.1e-173 611.7 509 60.5
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 1.1e-172 610.5 550 58.2
Gohir.A09G209000 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.5e-172 610.1 498 61.4
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 3.3e-172 609.0 504 61.5
ECA248G1402 Erigeron canadensis HOM05D001235 ORTHO05D005684 4.3e-172 608.6 512 59.0
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 4.3e-172 608.6 510 60.0
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 7.3e-172 607.8 550 58.4
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 2.8e-171 605.9 490 62.2
AT5G26570 Arabidopsis thaliana HOM05D001235 ORTHO05D005684 6.2e-171 604.7 506 59.7
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 6.2e-171 604.7 501 60.3
Aa31LG11G10130 Aethionema arabicum HOM05D001235 ORTHO05D005684 1.4e-170 603.6 500 60.0
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 4.0e-170 602.1 493 60.6
Sed0023516 Sechium edule HOM05D001235 ORTHO05D005684 4.0e-170 602.1 522 59.0
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 5.2e-170 601.7 501 59.7
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 6.8e-170 601.3 501 60.3
Thhalv10003634m.g Eutrema salsugineum HOM05D001235 ORTHO05D005684 6.8e-170 601.3 499 59.9
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 8.9e-170 600.9 508 59.4
BolC9t53563H Brassica oleracea HOM05D001235 ORTHO05D005684 1.5e-169 600.1 494 60.3
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 4.4e-169 598.6 494 60.1
C09p06430 Brassica napus HOM05D001235 ORTHO05D005684 9.9e-169 597.4 494 60.1
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 1.7e-168 596.7 493 60.6
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 1.7e-168 596.7 497 60.8
Zm00001eb409850 Zea mays HOM05D001235 ORTHO05D005684 1.7e-168 596.7 526 58.9
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 2.2e-168 596.3 494 60.7
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 3.7e-168 595.5 492 59.8
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 4.9e-168 595.1 493 60.0
A09p05840 Brassica napus HOM05D001235 ORTHO05D005684 6.4e-168 594.7 500 60.2
SGA_v2.0_scaffold28G12047 Striga asiatica HOM05D001235 ORTHO05D005684 6.4e-168 594.7 506 60.5
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 8.4e-168 594.3 513 58.3
BraA09t36226Z Brassica rapa HOM05D001235 ORTHO05D005684 8.4e-168 594.3 500 59.4
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 3.5e-166 589.0 581 53.2
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 3.0e-165 585.9 503 59.2
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 5.6e-164 581.6 519 57.0
Os12g0297500 Oryza sativa ssp. japonica HOM05D001235 ORTHO05D005684 5.6e-164 581.6 524 58.8
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 2.8e-163 579.3 519 57.4
Psat6g244000 Pisum sativum HOM05D001235 ORTHO05D005684 8.9e-162 574.3 446 64.1
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 2.6e-161 572.8 597 54.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 9.9e-161 570.9 515 58.1
SMO146G0043 Selaginella moellendorffii HOM05D001235 ORTHO05D005684 3.4e-153 545.8 506 55.3
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 1.3e-152 543.9 513 54.2
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 3.8e-152 542.3 439 62.0
HPP92_009959 Vanilla planifolia HOM05D001235 ORTHO05D005684 2.4e-151 539.7 405 65.7
BcaC04g23551 Brassica carinata HOM05D001235 ORTHO05D005684 2.1e-147 526.6 485 56.5
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 5.3e-146 521.9 564 51.1
Pp3c18_14870 Physcomitrium patens HOM05D001235 ORTHO05D005684 6.9e-138 495.0 509 52.1
TPR.G8889 Trifolium pratense HOM05D001235 ORTHO05D005684 8.7e-133 478.0 407 60.2
CBR_g30239 Chara braunii HOM05D001235 ORTHO05D005684 4.8e-131 472.2 519 48.9
Ciclev10004968m.g Citrus clementina HOM05D001235 ORTHO05D005684 7.9e-126 454.9 315 71.4
Cpa.g.sc8.311 Carica papaya HOM05D001235 ORTHO05D005684 3.0e-125 453.0 352 65.1
Pp3c14_19150 Physcomitrium patens HOM05D001235 ORTHO05D005684 4.6e-118 429.1 514 46.3
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 1.2e-102 377.9 342 58.2
Sc19g0007550 Simmondsia chinensis HOM05D001235 ORTHO05D005684 1.5e-84 317.8 258 60.5
COL.COLO4_08689 Corchorus olitorius HOM05D001235 ORTHO05D005684 3.4e-84 316.6 287 57.8
Pp3c17_18900 Physcomitrium patens HOM05D001235 ORTHO05D005684 3.7e-83 313.2 502 37.5
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 2.3e-80 303.9 396 41.9
Sc19g0007540 Simmondsia chinensis HOM05D001235 ORTHO05D005684 4.6e-73 279.6 221 63.8
MCO13G077 Micromonas commoda HOM05D001235 ORTHO05D005684 2.8e-70 270.4 390 41.5
Psat0s1999g0080 Pisum sativum HOM05D001235 ORTHO05D005684 1.3e-59 235.0 241 53.5
PRCOL_00000902 Prasinoderma coloniale HOM05D001235 ORTHO05D005684 4.0e-53 213.4 327 41.0
Cpa.g.sc502.2 Carica papaya HOM05D001235 ORTHO05D005684 1.6e-49 201.4 140 67.1
RcHm_v2.0_Chr4g0411251 Rosa chinensis HOM05D001235 ORTHO05D005684 6.6e-48 196.1 197 52.8
MCO16G355 Micromonas commoda HOM05D001235 ORTHO05D005684 3.6e-46 190.3 394 33.0
RcHm_v2.0_Chr4g0411211 Rosa chinensis HOM05D001235 ORTHO05D005684 1.4e-34 151.8 88 77.3
TPR.G40064 Trifolium pratense HOM05D001235 ORTHO05D005684 1.3e-27 128.6 89 59.6
arahy.Tifrunner.gnm1.ann1.GJ28M3 Arachis hypogaea HOM05D001235 ORTHO05D005684 1.4e-26 125.2 103 64.1
COL.COLO4_08688 Corchorus olitorius HOM05D001235 ORTHO05D005684 1.3e-22 112.1 79 58.2
Psat3g039720 Pisum sativum HOM05D001235 ORTHO05D004475 1.3e-22 112.1 78 71.8
C01p51380 Brassica napus HOM05D001235 ORTHO05D005684 1.6e-17 95.1 103 49.5
BolC4t22855H Brassica oleracea HOM05D001235 ORTHO05D005684 1.3e-16 92.0 103 48.5
Pp3c22_16753 Physcomitrium patens HOM05D001235 ORTHO05D315748 8.7e-16 89.4 176 34.1
CiPaw.14G082700 Carya illinoinensis HOM05D001235 ORTHO05D005684 2.6e-12 77.8 55 74.5
BolC6t37532H Brassica oleracea HOM05D001235 ORTHO05D005684 1.0e-11 75.9 103 42.7
HPP92_009960 Vanilla planifolia HOM05D001235 ORTHO05D005684 2.5e-10 71.2 78 43.6
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 4.2e-10 70.5 40 75.0
BcaC03g16071 Brassica carinata HOM05D001235 ORTHO05D005684 4.8e-06 57.0 52 51.9


User provided reference genes

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