Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.6e-55 217.2 101 100.0
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.1e-13 78.2 49 61.2
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 5.3e-13 77.8 55 56.4
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 9.1e-13 77.0 55 56.4
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.6e-12 76.3 55 54.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.6e-12 76.3 55 54.5
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 1.6e-12 76.3 63 49.2
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.6e-12 76.3 63 49.2
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 1.6e-12 76.3 49 57.1
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 2.0e-12 75.9 63 49.2
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 2.6e-12 75.5 56 50.0
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 2.6e-12 75.5 49 55.1
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.6e-12 75.5 55 54.5
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 4.5e-12 74.7 56 48.2
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.5e-12 74.7 49 57.1
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.5e-12 74.7 49 57.1
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 5.9e-12 74.3 55 52.7
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 5.9e-12 74.3 57 54.4
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 5.9e-12 74.3 57 54.4
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 5.9e-12 74.3 49 57.1
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 5.9e-12 74.3 49 57.1
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 5.9e-12 74.3 55 52.7
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 5.9e-12 74.3 55 52.7
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 7.7e-12 73.9 57 54.4
CDE04G2423 Ceratophyllum demersum HOM05D000026 ORTHO05D000127 7.7e-12 73.9 36 86.1
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 7.7e-12 73.9 55 50.9
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 7.7e-12 73.9 56 50.0
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 1.0e-11 73.6 49 55.1
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 1.0e-11 73.6 50 58.0
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.0e-11 73.6 49 55.1
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.3e-11 73.2 57 52.6
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 1.3e-11 73.2 57 52.6
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.3e-11 73.2 55 52.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.7e-11 72.8 56 51.8
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.7e-11 72.8 55 50.9
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.7e-11 72.8 49 59.2
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.7e-11 72.8 49 57.1
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.7e-11 72.8 55 50.9
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.2e-11 72.4 63 46.0
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 2.2e-11 72.4 49 53.1
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 2.2e-11 72.4 49 55.1
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.2e-11 72.4 50 54.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.2e-11 72.4 55 52.7
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 2.9e-11 72.0 57 52.6
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.9e-11 72.0 144 30.6
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.9e-11 72.0 144 30.6
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 2.9e-11 72.0 56 50.0
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 2.9e-11 72.0 57 49.1
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 2.9e-11 72.0 49 53.1
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 2.9e-11 72.0 49 57.1
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 2.9e-11 72.0 55 50.9
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 2.9e-11 72.0 55 49.1
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.9e-11 72.0 50 52.0
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 3.8e-11 71.6 55 52.7
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 5.0e-11 71.2 63 46.0
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 5.0e-11 71.2 134 32.8
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 5.0e-11 71.2 134 32.8
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 5.0e-11 71.2 49 53.1
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 5.0e-11 71.2 63 46.0
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.0e-11 71.2 49 53.1
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 5.0e-11 71.2 63 46.0
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 5.0e-11 71.2 49 53.1
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.0e-11 71.2 49 57.1
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 5.0e-11 71.2 49 55.1
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 5.0e-11 71.2 49 55.1
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 5.0e-11 71.2 49 53.1
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 8.5e-11 70.5 49 55.1
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 8.5e-11 70.5 55 49.1
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.5e-11 70.5 49 53.1
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.5e-11 70.5 49 53.1
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 8.5e-11 70.5 49 53.1
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.1e-10 70.1 49 55.1
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 1.1e-10 70.1 49 55.1
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.5e-10 69.7 49 51.0
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.9e-10 69.3 57 45.6
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 1.9e-10 69.3 48 50.0
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.5e-10 68.9 49 51.0
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.5e-10 68.9 49 53.1
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 3.2e-10 68.6 49 51.0
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 3.2e-10 68.6 43 55.8
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 4.2e-10 68.2 49 53.1
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 4.2e-10 68.2 49 53.1
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.2e-10 68.2 49 51.0
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 4.2e-10 68.2 49 51.0
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 5.5e-10 67.8 49 51.0
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 5.5e-10 67.8 49 55.1
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 5.5e-10 67.8 49 53.1
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 5.5e-10 67.8 49 53.1
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 5.5e-10 67.8 49 53.1
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 7.2e-10 67.4 49 51.0
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 7.2e-10 67.4 41 61.0
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.2e-10 67.4 49 51.0
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.2e-10 67.4 49 51.0
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 7.2e-10 67.4 41 63.4
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 7.2e-10 67.4 50 48.0
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 7.2e-10 67.4 49 49.0
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 7.2e-10 67.4 50 50.0
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 9.4e-10 67.0 49 55.1
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.2e-09 66.6 49 49.0
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.2e-09 66.6 53 47.2
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-09 66.6 50 50.0
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 1.6e-09 66.2 49 51.0
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.6e-09 66.2 51 51.0
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.6e-09 66.2 48 47.9
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.1e-09 65.9 49 51.0
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 2.1e-09 65.9 49 49.0
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.1e-09 65.9 49 49.0
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 2.1e-09 65.9 49 49.0
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.7e-09 65.5 49 49.0
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 3.6e-09 65.1 41 58.5
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 3.6e-09 65.1 49 49.0
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 3.6e-09 65.1 49 51.0
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 4.7e-09 64.7 49 49.0
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 6.1e-09 64.3 43 55.8
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 6.1e-09 64.3 43 55.8
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 8.0e-09 63.9 48 50.0
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 8.0e-09 63.9 48 47.9
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.0e-08 63.5 49 49.0
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.0e-08 63.5 41 58.5
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 1.4e-08 63.2 43 53.5
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 2.3e-08 62.4 49 44.9
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 2.3e-08 62.4 49 46.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 3.0e-08 62.0 43 53.5
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 3.0e-08 62.0 55 45.5
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 3.0e-08 62.0 47 51.1
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 3.0e-08 62.0 51 47.1
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 4.0e-08 61.6 41 56.1
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 4.0e-08 61.6 41 56.1
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 3.3e-07 58.5 49 44.9
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 3.3e-07 58.5 49 44.9
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 4.4e-07 58.2 53 41.5
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 4.4e-07 58.2 41 53.7
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 9.7e-07 57.0 46 50.0
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 6.3e-06 54.3 48 39.6
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 8.2e-06 53.9 64 32.8


User provided reference genes

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