Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.0e-256 888.6 462 100.0
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 9.5e-166 587.4 462 70.8
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 6.9e-132 474.9 469 56.1
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 2.3e-127 459.9 471 54.4
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.1e-121 441.0 473 53.3
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 2.7e-120 436.4 479 52.8
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 3.0e-119 433.0 486 53.3
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 3.0e-119 433.0 483 51.1
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.0e-119 433.0 477 53.2
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.5e-118 430.6 483 52.4
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 4.3e-118 429.1 484 50.8
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 9.6e-118 427.9 470 50.9
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 3.6e-117 426.0 490 53.1
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 6.9e-116 421.8 482 52.5
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.4e-115 419.5 473 50.5
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 4.5e-115 419.1 487 50.9
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 5.8e-115 418.7 509 48.5
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 5.8e-115 418.7 474 51.1
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 7.6e-115 418.3 477 52.0
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 2.9e-114 416.4 479 51.8
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.1e-113 414.5 481 50.5
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.9e-113 413.7 482 51.5
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 3.2e-113 412.9 482 51.5
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 3.2e-113 412.9 462 51.5
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 5.5e-113 412.1 478 50.6
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 5.5e-113 412.1 492 51.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 9.3e-113 411.4 480 51.5
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 1.6e-112 410.6 483 51.6
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.1e-112 410.2 472 50.8
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 7.9e-112 408.3 500 50.6
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.0e-111 407.9 478 49.6
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.0e-111 407.9 494 51.8
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.0e-111 407.9 487 48.9
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.8e-111 407.1 467 50.7
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 1.8e-111 407.1 480 51.7
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.3e-111 406.8 478 49.6
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 3.0e-111 406.4 517 49.3
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 3.0e-111 406.4 476 49.8
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 5.1e-111 405.6 469 51.6
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 6.7e-111 405.2 496 49.8
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 6.7e-111 405.2 483 49.1
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.5e-110 404.1 478 50.4
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 1.9e-110 403.7 479 49.9
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.9e-110 403.7 465 50.5
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 3.3e-110 402.9 470 50.0
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 3.3e-110 402.9 480 49.4
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 4.3e-110 402.5 471 50.3
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 4.3e-110 402.5 471 50.3
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 5.6e-110 402.1 462 50.4
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 7.4e-110 401.7 469 50.3
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.4e-110 401.7 465 50.5
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.3e-109 401.0 475 50.1
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.3e-109 401.0 475 50.1
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.6e-109 400.6 470 50.2
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 3.7e-109 399.4 479 49.9
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 3.7e-109 399.4 476 50.8
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 3.7e-109 399.4 475 50.1
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 6.2e-109 398.7 470 50.6
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 6.2e-109 398.7 481 50.5
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 8.1e-109 398.3 475 50.7
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.1e-108 397.9 471 51.0
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.1e-108 397.9 467 49.5
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.8e-108 397.1 478 49.0
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.8e-108 397.1 465 51.0
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 2.4e-108 396.7 473 50.3
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 5.3e-108 395.6 475 49.3
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 9.0e-108 394.8 467 49.3
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.2e-107 394.4 482 50.8
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.0e-107 393.7 491 48.1
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 3.4e-107 392.9 475 49.3
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.9e-106 389.8 463 49.9
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 4.9e-106 389.0 470 48.9
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 4.9e-106 389.0 470 49.1
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.1e-105 387.9 487 47.2
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.4e-105 387.5 465 50.8
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.9e-105 387.1 474 49.6
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 7.1e-105 385.2 492 47.4
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 2.3e-103 380.2 494 47.0
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 3.0e-103 379.8 514 46.5
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 3.9e-103 379.4 451 50.6
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 6.7e-103 378.6 462 50.0
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 4.3e-102 375.9 467 49.3
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 9.6e-102 374.8 489 48.1
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 2.1e-101 373.6 482 47.5
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 8.2e-101 371.7 494 47.0
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 1.4e-100 370.9 473 48.2
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.8e-100 370.5 473 48.4
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 4.1e-100 369.4 462 48.5
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 5.9e-99 365.5 376 53.2
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.3e-98 364.4 478 47.9
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.1e-97 361.3 471 47.8
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.9e-97 360.5 471 47.3
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.6e-96 356.3 477 47.0
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 6.1e-96 355.5 484 46.9
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 9.7e-94 348.2 473 46.1
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 6.3e-93 345.5 379 53.0
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 9.4e-89 331.6 480 44.4
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 7.9e-88 328.6 427 46.6
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 5.1e-87 325.9 403 48.1
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 8.8e-87 325.1 428 46.5
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 9.7e-86 321.6 407 47.7
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.7e-85 320.9 490 45.1
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 3.7e-85 319.7 411 48.7
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 4.8e-85 319.3 398 47.5
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 9.1e-76 288.5 466 40.6
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 1.8e-71 274.2 366 47.0
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 2.3e-71 273.9 402 44.5
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 5.2e-71 272.7 325 48.0
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 3.5e-67 260.0 470 37.7
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 4.8e-61 239.6 187 65.2
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 9.1e-60 235.3 241 54.8
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 1.4e-55 221.5 383 37.9
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.2e-54 218.4 305 45.2
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 5.9e-51 206.1 227 52.4
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.5e-49 201.4 226 50.9
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 6.1e-48 196.1 311 43.7
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.0e-47 193.7 208 54.3
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.7e-45 188.0 373 34.3
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 4.1e-44 183.3 289 43.6
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.7e-32 143.3 151 53.6
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.4e-31 141.7 308 36.0
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 1.6e-27 128.3 227 40.1
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 3.5e-27 127.1 158 47.5
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 3.2e-20 104.0 155 41.3
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 3.3e-17 94.0 185 35.7
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 7.3e-17 92.8 109 46.8
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 7.3e-17 92.8 94 50.0
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 2.0e-14 84.7 322 28.6
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 8.4e-13 79.3 192 33.3
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 2.3e-10 71.2 72 55.6
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.2e-06 58.9 93 46.2
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 4.5e-06 57.0 116 31.9


User provided reference genes

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