Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.3e-197 693.0 386 100.0
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.3e-172 608.6 385 89.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 4.6e-105 385.6 422 57.6
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 9.9e-100 367.9 430 54.4
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 7.1e-98 361.7 424 54.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 2.1e-97 360.1 432 53.9
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.7e-96 357.1 361 60.9
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.7e-96 357.1 450 52.7
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.9e-96 355.9 424 52.6
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 8.6e-96 354.8 426 52.8
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 8.6e-96 354.8 432 53.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 8.6e-96 354.8 432 53.7
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 7.3e-95 351.7 420 52.9
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.8e-94 349.7 425 52.0
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 4.7e-94 349.0 404 53.7
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 6.2e-94 348.6 432 51.9
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.1e-93 347.8 425 52.0
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.4e-93 347.4 433 52.0
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.4e-93 347.4 418 53.8
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 5.2e-93 345.5 432 51.9
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 8.9e-93 344.7 419 51.8
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.5e-92 344.0 428 51.6
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.0e-92 343.6 433 50.6
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.0e-92 343.6 418 53.1
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.6e-92 341.7 418 51.9
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-91 340.5 418 51.7
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.9e-91 339.7 432 51.2
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.9e-91 339.7 418 51.2
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 6.4e-91 338.6 431 50.8
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 8.4e-91 338.2 419 53.2
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-90 337.0 418 51.4
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.4e-90 336.7 429 49.7
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 3.2e-90 336.3 427 49.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.1e-89 333.6 411 52.1
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.5e-89 332.8 418 50.5
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 4.6e-89 332.4 421 50.4
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.0e-88 331.3 425 49.9
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.3e-88 330.1 425 50.8
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.3e-88 330.1 426 47.9
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 3.9e-88 329.3 431 50.3
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 6.6e-88 328.6 424 51.2
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.6e-88 328.6 424 51.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 8.7e-88 328.2 431 50.6
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.3e-87 325.9 431 49.0
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 4.3e-87 325.9 426 50.0
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 7.3e-87 325.1 424 49.3
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 7.3e-87 325.1 420 50.0
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 9.6e-87 324.7 419 50.1
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 9.6e-87 324.7 425 49.9
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.1e-86 323.6 431 47.1
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 4.7e-86 322.4 419 50.4
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 6.2e-86 322.0 326 57.4
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.1e-86 321.6 420 49.8
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 8.1e-86 321.6 424 50.5
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 8.1e-86 321.6 419 49.6
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.1e-85 321.2 431 47.6
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.1e-85 321.2 432 49.8
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.4e-85 320.9 386 52.3
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.8e-85 320.5 420 50.0
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.8e-85 320.5 420 50.0
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.4e-85 320.1 416 49.3
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 4.0e-85 319.3 426 48.6
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 4.0e-85 319.3 426 47.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 5.2e-85 318.9 420 48.6
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.2e-84 317.8 431 48.0
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 2.6e-84 316.6 424 50.0
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.6e-84 316.6 443 47.9
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 5.8e-84 315.5 420 48.3
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 7.6e-84 315.1 431 48.0
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.3e-83 314.3 424 49.5
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.2e-83 313.5 431 46.6
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 3.8e-83 312.8 390 52.3
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 6.4e-83 312.0 421 49.9
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 8.4e-83 311.6 423 47.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.4e-82 310.8 426 47.4
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.4e-82 310.1 426 47.7
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.2e-82 309.3 439 48.5
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.2e-82 309.3 419 49.6
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.1e-81 307.0 326 57.7
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.1e-81 307.0 431 46.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 3.5e-81 306.2 419 48.7
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 6.0e-81 305.4 326 55.2
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 6.0e-81 305.4 356 53.4
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.7e-80 303.9 421 47.5
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 6.6e-80 302.0 326 57.4
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.9e-79 300.4 424 49.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 7.3e-79 298.5 419 47.0
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 4.8e-78 295.8 427 45.9
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 8.1e-78 295.0 432 46.5
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 8.1e-78 295.0 427 46.8
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.0e-77 292.7 432 44.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-76 289.7 370 50.3
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 9.9e-76 288.1 413 46.7
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 9.3e-74 281.6 396 46.0
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-73 281.2 310 55.5
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.2e-73 281.2 425 45.6
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.6e-73 280.8 429 45.9
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 3.0e-72 276.6 330 52.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-70 271.2 410 46.6
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.6e-70 270.8 426 45.1
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 5.5e-66 255.8 455 41.8
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 4.6e-65 252.7 430 43.3
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 6.0e-65 252.3 430 42.8
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 6.0e-65 252.3 378 43.4
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-62 243.8 313 50.5
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.2e-60 238.0 261 52.9
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 3.4e-60 236.5 321 46.7
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.6e-57 227.6 256 52.0
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.3e-56 223.8 394 42.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-53 213.0 359 42.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.5e-52 211.1 230 56.1
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 3.9e-48 196.4 450 36.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.7e-46 189.9 274 47.8
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 2.2e-43 180.6 359 38.7
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.1e-39 168.3 269 45.0
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.3e-39 166.8 366 36.1
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 7.0e-37 159.1 183 50.8
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 5.9e-36 156.0 360 38.1
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.4e-34 148.7 306 39.2
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 9.4e-34 148.7 146 57.5
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.0e-32 145.2 229 44.5
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.0e-32 143.7 426 31.0
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.6e-31 140.6 159 52.8
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.8e-30 137.1 161 50.3
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 4.1e-29 133.3 207 46.4
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.0e-28 131.0 153 51.0
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-28 129.0 183 45.9
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.9e-27 127.1 333 31.8
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.8e-24 117.9 248 39.5
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-23 115.2 132 51.5
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.9e-20 102.8 166 42.8
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 4.4e-15 86.7 104 51.0
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 3.5e-12 77.0 103 49.5
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-11 75.1 93 51.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.7e-11 74.7 110 45.5
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.8e-09 67.4 188 36.7
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 4.7e-09 66.6 49 69.4
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 3.0e-08 63.9 120 45.8
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 5.2e-08 63.2 49 71.4


User provided reference genes

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