Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 5.4e-114 414.5 227 100.0
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.6e-86 323.2 194 92.3
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.2e-50 202.6 160 66.9
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 6.7e-48 194.9 160 64.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.8e-46 189.5 155 67.1
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 2.4e-45 186.4 155 65.8
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 2.3e-40 169.9 157 59.9
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.0e-40 169.5 156 59.0
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 3.0e-40 169.5 184 51.1
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 3.3e-39 166.0 197 51.8
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.3e-38 164.1 159 56.6
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.7e-38 163.7 150 59.3
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 6.3e-38 161.8 175 52.0
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 8.2e-38 161.4 160 56.2
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.8e-37 160.2 177 51.4
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 3.1e-37 159.5 155 56.8
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 3.1e-37 159.5 158 55.1
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 4.1e-37 159.1 165 52.1
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 5.3e-37 158.7 170 53.5
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 7.0e-37 158.3 162 53.1
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.6e-36 157.1 161 53.4
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.5e-36 156.0 156 55.1
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 4.5e-36 155.6 161 52.8
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 4.5e-36 155.6 191 49.2
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 5.9e-36 155.2 191 48.7
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.3e-35 154.1 156 55.1
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 2.9e-35 152.9 169 52.7
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.9e-35 152.9 153 54.2
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 3.8e-35 152.5 149 55.7
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 3.8e-35 152.5 156 54.5
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 6.5e-35 151.8 158 53.8
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 3.2e-34 149.4 171 49.7
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 5.5e-34 148.7 154 55.2
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 9.4e-34 147.9 159 49.7
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.2e-33 147.5 191 46.6
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.1e-33 146.7 159 50.3
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.1e-33 146.7 159 49.7
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 4.7e-33 145.6 156 52.6
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 6.1e-33 145.2 156 51.9
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 8.0e-33 144.8 158 49.4
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.0e-32 144.4 154 51.3
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.4e-32 144.1 177 48.0
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.4e-32 144.1 177 48.0
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.8e-32 143.7 177 47.5
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 2.3e-32 143.3 156 52.6
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 3.0e-32 142.9 149 53.0
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 4.0e-32 142.5 157 50.3
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 5.2e-32 142.1 158 50.6
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 5.2e-32 142.1 160 52.5
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.2e-32 142.1 176 47.7
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 6.8e-32 141.7 177 47.5
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 6.8e-32 141.7 154 50.0
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 3.4e-31 139.4 152 50.7
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 4.4e-31 139.0 156 51.3
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.4e-31 139.0 168 46.4
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 5.7e-31 138.7 156 50.0
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 9.8e-31 137.9 150 52.0
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 9.8e-31 137.9 154 50.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.3e-30 137.5 169 47.3
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-30 137.5 169 47.3
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.7e-30 137.1 150 51.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 3.7e-30 136.0 160 47.5
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 4.8e-30 135.6 170 47.1
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.8e-29 133.7 174 44.8
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.8e-29 133.7 154 51.3
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.4e-29 133.3 152 49.3
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.4e-29 132.1 213 41.8
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 7.0e-29 131.7 197 42.6
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 2.7e-28 129.8 157 48.4
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 5.9e-28 128.6 158 48.1
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 7.7e-28 128.3 156 49.4
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.0e-27 127.9 155 49.0
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.3e-27 127.5 155 49.7
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.2e-27 126.7 156 48.7
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 2.9e-27 126.3 158 46.2
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 3.8e-27 125.9 173 45.1
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.5e-26 124.0 156 48.1
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.2e-26 122.9 157 47.8
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 4.2e-26 122.5 149 48.3
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.7e-25 119.8 157 44.6
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 2.7e-25 119.8 222 37.8
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.6e-25 119.4 158 45.6
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.6e-25 119.4 189 39.7
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.8e-24 117.1 169 43.8
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.8e-24 117.1 179 43.6
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 3.0e-24 116.3 193 40.4
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 3.0e-24 116.3 159 42.8
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 8.8e-24 114.8 171 44.4
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.2e-23 114.4 157 42.7
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 2.0e-23 113.6 169 43.2
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 9.8e-23 111.3 198 38.9
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 9.8e-23 111.3 159 41.5
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 9.8e-23 111.3 159 41.5
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 9.8e-23 111.3 153 42.5
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 2.2e-22 110.2 154 46.1
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.2e-22 110.2 154 46.1
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 3.7e-22 109.4 153 45.8
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 3.1e-21 106.3 160 42.5
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 9.1e-21 104.8 161 42.9
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 9.1e-21 104.8 106 57.5
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 9.1e-21 104.8 160 40.0
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 2.0e-20 103.6 163 41.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.7e-20 103.2 187 39.0
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.7e-20 103.2 128 46.9
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 4.5e-20 102.4 172 39.0
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.0e-19 101.3 155 42.6
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 6.6e-19 98.6 193 36.8
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 6.6e-19 98.6 162 42.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.6e-19 98.6 175 38.3
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 2.5e-18 96.7 108 50.9
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 3.3e-18 96.3 158 41.1
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 3.3e-18 96.3 141 43.3
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 4.3e-18 95.9 151 37.7
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.8e-17 93.2 153 41.2
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 8.0e-17 91.7 169 39.1
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.0e-16 91.3 124 44.4
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.2e-15 87.8 159 38.4
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 5.7e-15 85.5 156 39.7
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.3e-14 84.3 159 37.1
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 9.2e-13 78.2 169 35.5
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 9.2e-13 78.2 105 44.8
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.2e-12 77.8 158 35.4
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 2.0e-12 77.0 110 49.1
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 2.7e-12 76.6 177 35.0
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.9e-11 72.8 158 35.4
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.9e-10 70.5 105 44.8
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.9e-10 70.5 169 32.5
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.5e-10 70.1 156 34.0
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.2e-09 67.8 154 36.4
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.2e-09 67.8 154 36.4
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.4e-08 64.3 77 49.4
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.8e-08 63.9 118 38.1
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-07 61.2 105 40.0
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.5e-07 60.8 140 37.1
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.5e-07 60.8 140 37.1
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 2.0e-07 60.5 48 62.5
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.0e-07 60.5 63 44.4
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.6e-07 60.1 67 44.8
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 1.3e-06 57.8 73 47.9
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 1.7e-06 57.4 127 36.2
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 2.2e-06 57.0 73 46.6
Pp3c15_23810 Physcomitrium patens HOM05D024020 ORTHO05D023538 2.2e-06 57.0 132 33.3
Pp3c15_23812 Physcomitrium patens HOM05D024020 ORTHO05D023538 2.2e-06 57.0 132 33.3
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 6.4e-06 55.5 63 54.0


User provided reference genes

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