Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 0.0e+00 1162.1 595 100.0
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.0e-216 756.1 796 58.0
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.5e-75 288.1 694 33.1
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 9.9e-75 285.4 695 33.2
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 4.9e-74 283.1 680 32.5
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 3.9e-71 273.5 860 30.1
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.6e-69 266.9 856 28.3
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.1e-68 265.4 696 31.3
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.1e-68 265.4 853 29.0
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 4.0e-68 263.5 674 32.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 6.9e-68 262.7 699 31.0
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.6e-67 260.8 692 31.5
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 7.6e-67 259.2 682 31.7
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 4.9e-66 256.5 674 31.9
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.2e-65 253.4 692 30.6
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 4.2e-65 253.4 906 27.9
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 9.3e-65 252.3 829 28.6
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 4.6e-64 250.0 691 31.5
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.3e-63 248.4 697 31.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 2.3e-63 247.7 689 32.4
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 8.7e-63 245.7 823 29.0
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.3e-62 243.8 694 30.8
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.3e-62 243.8 895 26.3
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.1e-61 241.1 700 30.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 8.1e-61 239.2 693 30.7
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 8.1e-61 239.2 687 29.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.8e-60 238.0 784 28.1
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.1e-60 237.3 846 28.7
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 3.1e-60 237.3 698 30.1
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 5.3e-60 236.5 693 30.2
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.2e-59 235.3 859 28.4
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.2e-59 235.3 689 31.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.5e-59 235.0 649 29.6
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.6e-59 234.2 678 31.4
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.0e-58 232.3 698 29.8
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.7e-58 231.5 704 30.5
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 2.9e-58 230.7 876 27.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 4.9e-58 229.9 793 28.2
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 8.4e-58 229.2 691 28.7
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.1e-57 228.8 696 30.2
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.1e-57 228.8 850 27.5
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.5e-57 227.6 808 27.8
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 9.3e-57 225.7 817 27.1
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.1e-56 224.6 717 28.9
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 7.9e-56 222.6 665 29.6
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-55 222.2 805 28.0
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.0e-55 222.2 690 29.1
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.8e-55 221.5 866 27.0
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.3e-55 221.1 662 29.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 3.0e-55 220.7 685 29.5
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.1e-55 219.9 800 27.8
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 5.1e-55 219.9 688 29.1
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 6.7e-55 219.5 682 28.7
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 8.7e-55 219.2 686 28.4
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 1.1e-54 218.8 659 30.2
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.5e-54 218.4 659 30.2
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.5e-54 218.4 684 29.7
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.9e-54 218.0 689 29.9
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 2.5e-54 217.6 832 28.4
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.5e-54 217.6 698 28.5
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.5e-54 217.6 666 29.1
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.3e-54 217.2 804 26.7
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 7.4e-54 216.1 673 27.9
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 9.6e-54 215.7 696 29.2
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.3e-53 215.3 647 30.9
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.8e-53 213.4 698 28.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 4.8e-53 213.4 665 28.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 4.8e-53 213.4 671 30.1
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.4e-52 211.1 529 33.6
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.1e-52 210.3 699 28.2
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.3e-52 209.9 531 32.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.2e-51 208.8 662 29.0
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.2e-51 208.8 667 28.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 4.5e-51 206.8 528 33.5
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.5e-51 206.8 662 29.3
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 2.9e-50 204.1 683 27.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 8.5e-50 202.6 694 29.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.1e-49 202.2 691 27.5
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.5e-49 201.1 694 29.8
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 3.2e-49 200.7 699 29.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.2e-49 200.7 689 27.3
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.5e-49 199.9 691 27.5
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 7.2e-49 199.5 734 28.2
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 9.3e-49 199.1 643 29.2
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 9.3e-49 199.1 674 29.4
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 3.6e-48 197.2 619 29.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 4.6e-48 196.8 655 28.7
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.1e-48 196.4 690 27.8
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.3e-47 195.3 624 30.1
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.8e-47 194.9 729 27.8
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.8e-47 194.9 642 29.1
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.3e-47 194.5 691 27.1
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 3.0e-47 194.1 592 28.0
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.5e-46 191.0 628 31.1
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.5e-46 191.0 690 27.7
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.5e-46 191.0 608 30.4
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 3.3e-46 190.7 679 28.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 4.3e-46 190.3 627 30.9
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 5.7e-46 189.9 657 26.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.7e-46 189.9 856 26.2
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 5.7e-46 189.9 595 28.6
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 5.7e-46 189.9 694 28.7
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.6e-45 188.3 762 26.9
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.2e-45 188.0 625 30.6
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 4.8e-45 186.8 666 27.2
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.4e-44 185.3 413 33.7
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.4e-44 184.5 693 27.7
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 4.1e-44 183.7 709 26.8
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.2e-43 182.2 734 27.4
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 2.6e-43 181.0 685 26.3
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 3.4e-43 180.6 526 31.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 7.7e-43 179.5 635 28.7
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 7.7e-43 179.5 695 27.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.9e-42 177.6 521 31.5
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 3.8e-42 177.2 660 29.1
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 5.0e-42 176.8 644 28.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 2.5e-41 174.5 685 27.9
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.5e-41 174.5 719 26.1
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 5.5e-41 173.3 812 25.9
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 2.1e-40 171.4 669 28.3
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 5.1e-39 166.8 446 33.9
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 5.1e-39 166.8 605 29.4
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 6.7e-39 166.4 441 33.6
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.1e-38 165.6 644 28.4
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 2.6e-38 164.5 436 33.9
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 6.3e-37 159.8 513 29.8
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.1e-36 159.1 691 27.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.1e-36 159.1 450 33.3
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.4e-36 158.7 445 33.0
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.8e-36 158.3 433 33.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 4.5e-35 153.7 459 32.5
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.7e-35 152.9 649 26.7
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.0e-34 152.5 212 42.5
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.7e-34 151.8 438 32.0
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 7.4e-30 136.3 391 29.7
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-27 128.6 299 33.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-27 128.6 299 33.1
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.4e-23 115.5 420 29.5
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 7.0e-20 103.2 231 32.9
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.7e-19 101.3 568 23.4
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 3.5e-19 100.9 68 67.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-17 95.9 59 76.3
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.1e-17 95.9 59 76.3
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.8e-15 88.6 59 72.9
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.8e-15 86.7 70 58.6
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 3.4e-14 84.3 415 25.1
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 5.7e-14 83.6 288 23.6
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 8.3e-13 79.7 69 62.3
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.1e-12 79.3 711 20.3
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 2.4e-12 78.2 331 26.0
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 9.1e-12 76.3 95 43.2
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.7e-11 74.7 49 71.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 3.5e-11 74.3 128 40.6
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 7.7e-11 73.2 120 38.3
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 5.0e-10 70.5 125 40.0
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.9e-09 68.6 128 36.7
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-07 60.8 120 30.8


User provided reference genes

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