Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 0.0e+00 1421.4 719 100.0
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 0.0e+00 1119.0 719 82.2
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 3.1e-296 1021.5 704 73.9
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.0e-296 1021.1 705 73.5
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.7e-294 1015.8 705 72.8
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 716 70.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.3e-291 1005.4 710 72.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.4e-285 986.1 707 71.6
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.8e-284 980.3 709 70.4
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.3e-282 974.9 716 71.1
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 4.3e-282 974.5 711 70.5
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 9.5e-282 973.4 708 70.9
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.2e-281 973.0 705 70.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 8.9e-280 966.8 717 70.9
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.6e-279 965.3 709 69.8
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 3.4e-279 964.9 708 68.6
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.2e-278 962.2 704 70.2
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.4e-277 959.5 734 67.7
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 3.2e-277 958.4 722 67.3
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.7e-276 955.3 742 67.4
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.7e-276 955.3 714 68.5
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.9e-275 951.4 708 68.2
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.5e-274 949.5 712 68.4
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.9e-274 949.1 708 68.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.5e-274 948.7 714 66.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 5.6e-274 947.6 718 67.5
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 9.6e-274 946.8 709 68.3
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.2e-273 946.4 706 68.8
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.1e-273 945.7 709 69.5
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 3.6e-273 944.9 703 69.0
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 8.1e-273 943.7 711 67.4
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 8.1e-273 943.7 713 67.5
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.1e-272 943.3 706 68.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.4e-272 943.0 703 69.1
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.8e-272 942.6 711 67.4
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.4e-272 942.2 684 70.3
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.5e-271 939.5 705 68.1
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.6e-271 938.7 722 65.8
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.6e-271 938.7 715 67.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 4.4e-271 937.9 707 66.6
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 9.9e-271 936.8 715 67.0
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.3e-270 936.4 715 67.8
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.3e-270 936.4 714 66.8
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.7e-270 936.0 715 67.3
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.7e-270 936.0 715 67.3
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.2e-270 935.6 705 68.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.2e-270 935.6 724 66.2
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-269 932.9 706 67.0
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.4e-269 932.2 706 68.3
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 3.2e-269 931.8 714 67.4
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 9.3e-269 930.2 728 66.9
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 9.3e-269 930.2 739 65.2
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.0e-268 927.5 711 66.9
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.5e-266 922.2 712 67.1
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.4e-264 916.4 788 61.9
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 9.0e-264 913.7 707 65.2
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.5e-263 912.9 706 67.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.4e-261 904.4 710 65.4
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 9.3e-261 903.7 724 64.5
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 4.6e-260 901.4 705 66.2
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 7.9e-260 900.6 708 65.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.0e-259 900.2 708 64.4
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.3e-259 899.8 711 64.0
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.3e-259 899.8 741 63.3
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 5.1e-259 897.9 710 66.5
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.3e-258 895.2 719 65.0
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.3e-258 895.2 703 66.0
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 7.4e-258 894.0 721 63.5
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 4.0e-256 888.3 706 65.2
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.3e-256 887.9 705 65.0
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 5.3e-256 887.9 705 64.8
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.2e-255 886.7 683 66.5
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.2e-255 886.7 706 65.4
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.5e-255 886.3 706 65.4
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.7e-254 882.9 706 65.9
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.1e-253 880.2 721 63.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 5.5e-253 877.9 705 64.5
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 9.3e-253 877.1 714 62.9
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.6e-252 876.3 706 63.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.7e-252 875.5 706 64.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 6.0e-252 874.4 726 61.6
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.0e-251 873.6 710 63.1
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 5.1e-251 871.3 703 64.2
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.1e-250 870.2 707 63.5
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.6e-249 866.3 711 61.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.2e-249 864.4 658 68.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.8e-248 862.8 708 63.7
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 2.4e-248 862.4 709 62.1
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 4.0e-248 861.7 714 62.6
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 6.9e-248 860.9 682 66.4
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.6e-247 859.0 708 63.1
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 5.8e-247 857.8 710 62.8
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 7.6e-247 857.4 695 63.7
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.2e-246 855.9 648 69.3
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 3.8e-246 855.1 710 62.7
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 6.5e-246 854.4 710 62.5
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 6.5e-246 854.4 704 63.2
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.9e-245 852.8 706 62.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.5e-245 852.4 709 62.9
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 5.5e-245 851.3 713 62.7
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 5.1e-243 844.7 706 62.9
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 8.7e-243 844.0 708 62.3
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 8.7e-243 844.0 708 62.1
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.5e-242 843.2 713 62.4
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 4.8e-241 838.2 707 63.1
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.1e-240 835.1 707 61.2
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 6.5e-238 827.8 712 61.2
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 7.2e-237 824.3 643 66.3
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.0e-235 820.5 704 60.8
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.8e-235 819.7 727 60.2
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.8e-233 811.6 707 59.8
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.2e-223 780.4 721 58.8
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 8.5e-222 774.2 729 58.3
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 5.7e-218 761.5 702 58.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.6e-212 743.4 574 68.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 3.6e-212 742.3 616 64.6
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.2e-210 737.3 706 56.1
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.4e-210 735.7 711 55.3
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.4e-208 730.3 655 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 4.2e-205 718.8 651 57.3
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.0e-203 714.1 705 54.0
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.0e-203 712.2 584 65.2
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 5.2e-203 711.8 620 62.6
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.3e-201 704.9 555 67.7
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 7.0e-200 701.4 710 55.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.6e-196 689.1 576 64.2
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 3.7e-193 679.1 499 69.1
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.0e-187 659.1 569 62.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 2.4e-184 649.8 700 52.0
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.8e-180 636.3 709 49.6
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 3.5e-151 539.7 870 39.7
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.1e-147 526.6 338 76.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.6e-146 521.9 589 51.6
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.7e-116 424.5 438 56.4
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-110 405.2 261 76.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.2e-105 387.5 264 74.6
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 9.5e-80 302.4 371 45.3
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 8.3e-76 289.3 504 37.9
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.2e-69 268.9 325 46.8
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 3.5e-58 230.7 559 34.2
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.9e-51 208.4 184 58.7
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 7.3e-48 196.4 286 40.9
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.8e-44 184.1 129 69.0
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.9e-40 171.8 122 73.0
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 2.8e-39 167.9 121 72.7
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 5.6e-32 143.7 171 48.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 4.0e-30 137.5 305 33.1
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 5.5e-27 127.1 127 48.8
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 7.1e-27 126.7 325 31.1
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 2.1e-26 125.2 117 51.3
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.8e-25 122.1 179 40.2
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.2e-21 109.4 326 30.1
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.7e-20 105.5 121 52.9
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-16 92.8 79 59.5
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.0e-12 79.7 63 52.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-11 76.3 58 58.6
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 6.1e-10 70.5 57 56.1
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.0e-09 69.7 56 66.1
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.8e-09 68.9 81 40.7
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.1e-09 67.4 47 59.6
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.1e-09 67.4 47 59.6
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 6.7e-09 67.0 37 83.8


User provided reference genes

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