Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.7e-126 456.1 232 100.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.3e-35 153.3 173 44.5
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-33 147.5 167 46.7
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-33 147.5 167 46.7
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.8e-33 146.4 181 44.8
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 3.7e-33 146.0 182 47.8
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 6.2e-33 145.2 180 46.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.2e-33 145.2 171 45.0
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.1e-32 144.4 178 44.9
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.4e-32 144.1 204 42.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.4e-32 143.3 179 48.0
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.0e-32 142.5 120 58.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.0e-32 142.5 166 45.8
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.0e-32 142.5 166 45.8
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 4.0e-32 142.5 178 43.8
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 5.3e-32 142.1 185 42.7
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 9.0e-32 141.4 180 43.3
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.2e-31 141.0 176 44.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.5e-31 140.6 185 44.9
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.5e-31 140.6 181 46.4
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.5e-31 140.6 183 41.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-31 140.2 185 44.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 2.6e-31 139.8 170 46.5
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 4.5e-31 139.0 173 43.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 4.5e-31 139.0 165 47.9
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 5.8e-31 138.7 183 45.4
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.8e-31 138.7 170 44.1
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 5.8e-31 138.7 126 55.6
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.3e-30 137.5 179 46.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.3e-30 137.5 193 40.9
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 3.8e-30 136.0 175 45.7
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 3.8e-30 136.0 152 47.4
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 6.5e-30 135.2 169 45.6
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 6.5e-30 135.2 169 47.3
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 6.5e-30 135.2 186 44.1
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 8.4e-30 134.8 187 40.1
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 8.4e-30 134.8 167 47.3
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.1e-29 134.4 131 53.4
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-29 133.7 170 45.9
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.9e-29 133.7 168 47.0
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.9e-29 133.7 164 45.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.9e-29 133.7 197 41.6
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.9e-29 133.7 197 41.6
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.9e-29 133.7 182 42.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.5e-29 133.3 167 43.7
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.2e-29 132.9 173 42.8
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 4.2e-29 132.5 176 44.9
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 4.2e-29 132.5 165 41.2
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.2e-29 132.5 165 42.4
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.5e-29 132.1 159 47.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 5.5e-29 132.1 172 45.9
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 7.1e-29 131.7 189 43.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.1e-29 131.7 116 54.3
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.1e-29 131.7 182 42.3
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-28 131.0 176 44.3
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.2e-28 131.0 183 42.1
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.2e-28 131.0 188 43.6
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.6e-28 130.6 122 47.5
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.1e-28 130.2 121 53.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.1e-28 130.2 170 42.4
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.1e-28 130.2 162 45.1
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.7e-28 129.8 168 42.3
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.5e-28 129.4 185 40.0
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.5e-28 129.4 165 41.8
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 4.6e-28 129.0 165 41.8
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 4.6e-28 129.0 124 54.8
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 4.6e-28 129.0 124 54.8
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.6e-28 129.0 159 45.9
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 7.9e-28 128.3 185 41.6
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.0e-27 127.9 162 44.4
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.0e-27 127.9 161 44.7
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.0e-27 127.9 145 44.8
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.3e-27 127.5 172 41.9
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.3e-27 127.5 162 47.5
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.8e-27 127.1 182 43.4
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.8e-27 127.1 109 59.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 3.0e-27 126.3 171 42.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.9e-27 125.9 162 46.9
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 5.1e-27 125.6 168 44.0
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 5.1e-27 125.6 156 42.9
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.1e-27 125.6 174 40.8
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 6.7e-27 125.2 158 45.6
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 8.7e-27 124.8 171 42.7
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 8.7e-27 124.8 157 44.6
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.1e-26 124.4 113 54.0
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.1e-26 124.4 180 40.6
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.5e-26 124.0 129 48.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.5e-26 124.0 166 39.2
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.9e-26 123.6 135 53.3
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.3e-26 122.5 171 42.1
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.3e-26 122.5 193 39.4
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.7e-26 122.1 172 41.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 9.7e-26 121.3 162 40.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 9.7e-26 121.3 185 38.4
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.6e-25 120.6 174 39.7
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.6e-25 120.6 171 39.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.6e-25 120.6 111 54.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.2e-25 120.2 178 39.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 3.7e-25 119.4 157 44.6
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 3.7e-25 119.4 111 53.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 8.2e-25 118.2 124 46.8
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.8e-24 117.1 176 45.5
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.4e-24 116.7 163 41.1
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.1e-24 116.3 164 40.9
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.1e-24 116.3 114 50.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 3.1e-24 116.3 110 51.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.1e-24 115.9 86 59.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 6.9e-24 115.2 167 40.7
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-23 114.0 114 47.4
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.9e-22 109.8 130 43.1
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 4.2e-21 105.9 92 56.5
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 5.5e-21 105.5 148 43.2
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.2e-20 104.4 115 47.0
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.1e-20 103.6 178 40.4
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.7e-20 103.2 178 40.4
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 3.6e-20 102.8 179 38.0
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.6e-20 102.4 123 43.9
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.1e-18 97.8 165 37.0
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 7.4e-18 95.1 157 36.3
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 9.7e-18 94.7 64 65.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.8e-14 82.8 171 29.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 7.2e-13 78.6 75 56.0
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.1e-12 77.0 61 55.7
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 5.1e-11 72.4 57 64.9
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.0e-07 60.5 48 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.9e-06 56.6 219 21.5
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-06 55.8 80 36.2


User provided reference genes

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