Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 7.4e-101 370.5 187 100.0
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.7e-81 306.2 166 93.4
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 4.7e-63 245.0 168 74.4
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.1e-61 240.4 159 74.8
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 3.1e-59 232.3 153 75.8
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 9.1e-59 230.7 153 75.2
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.2e-58 230.3 156 70.5
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 2.6e-58 229.2 161 71.4
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 4.5e-58 228.4 164 68.3
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.0e-57 227.3 156 73.1
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.7e-57 226.5 160 68.8
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 2.9e-57 225.7 160 70.6
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 5.0e-57 224.9 160 71.2
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 8.5e-57 224.2 166 68.1
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.5e-56 223.4 166 68.1
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.5e-56 223.4 154 73.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 7.2e-56 221.1 155 72.9
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 7.2e-56 221.1 163 68.1
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 9.4e-56 220.7 143 76.9
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 2.1e-55 219.5 152 73.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.1e-55 219.5 168 65.5
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.1e-55 219.5 156 71.2
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 3.6e-55 218.8 169 65.1
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 8.0e-55 217.6 154 70.8
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 8.0e-55 217.6 161 69.6
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 8.0e-55 217.6 158 72.2
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.4e-54 216.9 155 71.6
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.3e-54 216.1 155 71.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 2.3e-54 216.1 155 71.6
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 3.0e-54 215.7 152 71.1
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 3.0e-54 215.7 145 72.4
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 3.0e-54 215.7 158 71.5
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.0e-54 215.3 135 78.5
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 4.0e-54 215.3 146 76.0
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 6.8e-54 214.5 146 74.0
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 6.8e-54 214.5 163 68.7
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 8.8e-54 214.2 147 71.4
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 8.8e-54 214.2 176 67.6
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 1.2e-53 213.8 156 66.0
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.0e-53 213.0 161 68.3
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-53 213.0 141 75.9
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.0e-53 213.0 156 66.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 2.6e-53 212.6 152 70.4
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.6e-53 212.6 153 70.6
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 4.4e-53 211.8 153 66.0
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 4.4e-53 211.8 157 66.9
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.7e-52 209.9 152 69.1
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.7e-52 209.9 139 77.0
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.2e-52 209.5 140 76.4
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.2e-52 209.5 153 66.0
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.2e-52 209.5 189 59.8
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 2.2e-52 209.5 145 73.8
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.8e-52 209.1 153 69.9
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 3.7e-52 208.8 153 68.0
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 8.3e-52 207.6 157 68.2
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 8.3e-52 207.6 149 70.5
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.4e-51 206.1 155 67.1
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 3.1e-51 205.7 143 73.4
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 7.0e-51 204.5 147 67.3
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.6e-50 203.4 142 71.1
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.6e-50 203.4 149 66.4
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 1.6e-50 203.4 143 71.3
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.7e-50 202.6 154 68.2
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.5e-50 202.2 152 69.1
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 3.5e-50 202.2 154 66.9
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.3e-49 200.3 152 64.5
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.7e-49 199.9 146 69.2
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 3.8e-49 198.7 144 70.1
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 5.0e-49 198.4 148 68.2
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 6.5e-49 198.0 144 70.1
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 6.5e-49 198.0 144 70.8
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.1e-48 197.2 144 69.4
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.1e-48 197.2 136 72.8
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.1e-48 197.2 144 68.8
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.1e-48 197.2 184 58.2
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.9e-48 196.4 146 71.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 7.2e-48 194.5 124 76.6
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 9.4e-48 194.1 138 71.7
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.6e-47 193.4 145 69.7
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 2.1e-47 193.0 141 69.5
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.1e-47 193.0 144 66.7
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 4.7e-47 191.8 135 72.6
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 8.0e-47 191.0 135 72.6
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.8e-46 189.9 144 66.0
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 5.2e-46 188.3 149 67.1
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 5.2e-46 188.3 149 67.1
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.2e-45 187.2 149 66.4
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.2e-45 187.2 149 66.4
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.0e-45 186.4 180 59.4
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.0e-45 186.4 121 74.4
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 3.4e-45 185.7 151 65.6
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.4e-45 185.7 137 69.3
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 4.4e-45 185.3 149 65.8
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 5.7e-45 184.9 137 70.8
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.5e-45 184.5 107 86.0
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.8e-44 182.6 138 68.8
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.8e-44 182.6 161 60.2
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 3.7e-44 182.2 137 68.6
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 8.3e-44 181.0 156 62.2
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 8.3e-44 181.0 156 62.2
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.4e-43 180.3 156 62.2
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.8e-43 179.9 137 68.6
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 1.8e-43 179.9 153 60.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 7.0e-43 177.9 121 72.7
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 2.0e-42 176.4 130 70.8
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 5.0e-41 171.8 146 57.5
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.0e-41 171.8 119 69.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 5.0e-41 171.8 144 60.4
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 3.3e-40 169.1 128 69.5
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 3.3e-40 169.1 103 81.6
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 3.3e-40 169.1 109 80.7
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 5.6e-40 168.3 128 69.5
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 8.0e-39 164.5 114 73.7
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.0e-37 159.8 118 71.2
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 9.8e-37 157.5 125 62.4
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 9.8e-37 157.5 119 71.4
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.1e-35 154.1 118 66.1
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.7e-34 149.4 101 73.3
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.5e-34 149.1 120 56.7
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 2.1e-31 139.8 100 70.0
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 4.7e-31 138.7 112 63.4
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.3e-30 136.3 104 70.2
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 7.5e-29 131.3 81 77.8
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.9e-24 116.7 83 72.3
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.2e-23 114.0 91 63.7
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 5.2e-22 108.6 125 46.4
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 1.2e-21 107.5 73 76.7
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.2e-20 103.2 125 43.2
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.1e-18 96.7 60 75.0
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 2.7e-18 96.3 129 39.5
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.8e-15 86.3 58 67.2
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 6.8e-14 81.6 53 69.8
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.6e-13 79.7 102 48.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.1e-11 72.4 47 74.5
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.1e-08 64.3 48 66.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.1e-08 64.3 48 66.7
SEGI_24027 Sequoiadendron giganteum HOM05D000289 ORTHO05D000208 4.3e-08 62.4 150 29.3


User provided reference genes

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