Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.3e-196 689.5 344 100.0
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.8e-121 439.9 303 75.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.5e-117 425.6 292 78.4
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.5e-104 383.6 330 60.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.9e-103 379.4 329 62.0
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.1e-102 377.5 323 61.0
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 4.7e-101 372.1 316 60.1
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.4e-100 370.5 327 60.6
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.8e-100 370.2 323 58.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 3.9e-100 369.0 325 59.4
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.8e-98 362.8 324 59.0
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.8e-98 362.8 327 59.3
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.1e-97 360.9 327 59.0
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.8e-97 360.1 324 57.7
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.8e-97 360.1 322 58.7
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 2.4e-97 359.8 324 58.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.1e-97 359.0 328 57.9
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 4.1e-97 359.0 325 58.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 5.3e-97 358.6 324 57.4
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.3e-97 358.6 322 57.8
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.0e-96 356.7 328 56.4
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.6e-96 356.3 328 56.4
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 4.5e-96 355.5 321 56.4
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.5e-96 355.5 322 57.1
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.9e-96 355.1 328 55.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-95 354.0 322 56.8
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.7e-95 353.6 327 58.1
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.7e-95 353.6 327 56.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 2.2e-95 353.2 325 58.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.2e-95 353.2 325 57.2
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.8e-95 352.4 319 56.7
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.0e-95 352.1 278 63.3
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 6.5e-95 351.7 326 55.8
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.5e-95 351.7 328 57.0
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.1e-94 350.9 329 56.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.1e-94 350.9 327 57.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.5e-94 350.5 328 56.4
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.5e-94 350.5 328 56.4
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-94 350.5 328 56.1
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 2.5e-94 349.7 322 56.5
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.2e-94 349.0 326 55.8
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 5.5e-94 348.6 324 56.5
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 9.4e-94 347.8 325 56.3
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.7e-93 346.3 326 55.5
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.6e-93 345.9 328 55.5
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 4.7e-93 345.5 320 56.6
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.7e-93 345.5 329 55.3
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.1e-93 345.1 323 57.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 8.0e-93 344.7 325 55.1
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.0e-92 342.8 326 55.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 3.0e-92 342.8 326 55.8
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 5.2e-92 342.0 322 56.5
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.2e-92 342.0 323 56.3
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 8.8e-92 341.3 322 56.8
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.1e-91 340.9 327 55.7
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.5e-91 340.5 327 55.0
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.5e-91 340.5 319 56.4
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 2.6e-91 339.7 328 55.5
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 3.3e-91 339.3 329 56.8
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.3e-91 339.3 322 56.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 4.4e-91 339.0 325 55.4
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 5.7e-91 338.6 326 54.9
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 9.7e-91 337.8 323 56.7
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.3e-90 337.4 325 55.7
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-90 337.4 321 55.5
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.7e-90 337.0 370 51.1
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.2e-90 336.7 331 55.3
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 4.8e-90 335.5 320 55.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.4e-89 334.0 313 55.6
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 4.1e-89 332.4 327 56.3
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.3e-89 332.0 321 54.2
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 7.0e-89 331.6 324 54.0
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.2e-88 330.9 323 55.7
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.6e-88 330.5 322 53.4
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.6e-88 330.5 322 53.4
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.0e-88 330.1 324 53.7
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.5e-88 329.3 325 53.2
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 6.5e-87 325.1 321 53.3
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 6.5e-87 325.1 330 53.9
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.5e-86 323.9 322 53.1
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.5e-86 323.2 326 54.3
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 4.2e-86 322.4 322 52.5
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.6e-85 320.5 325 54.5
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 6.1e-85 318.5 323 52.6
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.0e-84 316.2 325 52.9
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 5.2e-84 315.5 327 53.2
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.2e-83 314.3 325 53.5
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 9.8e-83 311.2 325 52.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 9.8e-83 311.2 323 52.3
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.3e-82 310.8 325 52.0
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 3.7e-82 309.3 325 51.4
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 3.7e-82 309.3 325 52.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 4.8e-82 308.9 329 52.9
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.8e-81 307.0 307 52.1
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.8e-81 307.0 325 52.0
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.8e-81 307.0 325 51.7
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 7.0e-81 305.1 298 55.7
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 9.1e-81 304.7 222 68.5
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 2.0e-80 303.5 323 51.1
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.0e-80 303.5 323 50.8
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 3.5e-80 302.8 320 50.9
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 4.5e-80 302.4 320 51.2
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 4.5e-80 302.4 326 51.8
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.3e-79 300.8 222 67.1
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.9e-79 299.7 326 51.5
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 6.5e-79 298.5 320 50.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 8.5e-79 298.1 321 51.1
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 3.2e-78 296.2 294 53.1
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.0e-76 289.7 323 49.2
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.2e-75 287.7 221 64.7
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 8.3e-74 281.6 417 42.7
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 7.0e-73 278.5 374 44.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.5e-70 270.8 307 49.8
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 9.5e-70 268.1 228 60.1
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 6.1e-69 265.4 323 45.5
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.2e-68 262.3 308 49.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 8.9e-68 261.5 263 52.5
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.6e-67 260.0 255 56.9
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 3.7e-66 256.1 281 48.4
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.8e-65 253.8 178 69.1
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.3e-63 247.7 177 67.8
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.3e-63 246.9 544 32.7
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 5.0e-63 245.7 307 43.6
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 7.5e-59 231.9 281 45.6
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.4e-57 227.6 312 40.7
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.5e-56 223.0 312 40.4
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.6e-53 214.2 232 48.7
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.6e-53 214.2 313 39.6
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.1e-52 209.9 226 51.8
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.1e-47 192.6 208 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 4.9e-42 176.0 196 44.9
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 2.1e-40 170.6 198 50.0
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.5e-35 154.5 303 31.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-30 138.3 99 69.7
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 9.6e-30 135.2 96 68.8
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.8e-29 132.9 94 63.8
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.2e-29 132.5 94 63.8
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 3.4e-27 126.7 99 66.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.9e-22 110.9 76 69.7
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 6.2e-21 105.9 81 59.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.4e-17 94.7 215 30.7
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.9e-17 94.4 71 62.0
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 3.0e-15 87.0 77 61.0
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.0e-11 74.3 59 62.7
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.8e-10 70.1 100 40.0
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 3.5e-08 63.5 72 48.6
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 6.0e-08 62.8 49 59.2
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 6.0e-08 62.8 49 59.2
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 7.9e-08 62.4 45 64.4
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.8e-07 61.2 43 65.1


User provided reference genes

Program Settings