Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 9.4e-130 466.8 232 100.0
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.0e-104 382.1 230 86.5
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 3.4e-23 112.8 233 32.6
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.2e-22 110.2 218 33.9
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 1.2e-20 104.4 222 32.4
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.6e-20 104.0 242 30.6
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 2.1e-20 103.6 215 33.0
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 4.6e-20 102.4 199 33.7
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 4.6e-20 102.4 212 34.4
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 4.6e-20 102.4 212 34.4
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 6.1e-20 102.1 242 31.0
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 7.9e-20 101.7 242 30.2
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 7.9e-20 101.7 245 29.4
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 1.0e-19 101.3 199 36.7
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.4e-19 100.9 222 33.8
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.4e-19 100.9 222 33.8
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.4e-19 100.9 222 33.8
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.4e-19 100.9 193 30.1
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 1.8e-19 100.5 193 35.8
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 2.3e-19 100.1 194 32.5
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 3.0e-19 99.8 148 38.5
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 3.0e-19 99.8 188 33.5
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 3.0e-19 99.8 196 34.2
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 5.1e-19 99.0 205 32.7
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 5.1e-19 99.0 226 31.0
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 6.7e-19 98.6 210 34.3
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 6.7e-19 98.6 248 30.2
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 1.1e-18 97.8 192 32.8
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 1.5e-18 97.4 195 34.9
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.9e-18 97.1 188 34.0
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.5e-18 96.7 211 31.3
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 2.5e-18 96.7 221 33.9
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 4.3e-18 95.9 195 34.9
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 4.3e-18 95.9 245 31.0
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 9.7e-18 94.7 216 32.9
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 1.3e-17 94.4 145 38.6
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 4.8e-17 92.4 188 34.0
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 1.1e-16 91.3 250 30.0
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 4.1e-16 89.4 200 31.5
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 4.1e-16 89.4 180 34.4
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.3e-16 89.0 216 29.2
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 9.1e-16 88.2 259 29.3
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 9.1e-16 88.2 155 36.1
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 9.1e-16 88.2 141 35.5
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 2.6e-15 86.7 212 30.7
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 2.6e-15 86.7 191 31.9
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 3.4e-15 86.3 183 35.5
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 3.4e-15 86.3 190 32.1
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 3.4e-15 86.3 153 35.3
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 4.5e-15 85.9 195 30.3
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.5e-15 85.9 190 33.7
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 5.9e-15 85.5 190 32.1
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 5.9e-15 85.5 199 31.7
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 5.9e-15 85.5 199 31.7
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.7e-14 84.0 211 30.8
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.2e-14 83.6 191 31.4
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 2.9e-14 83.2 135 36.3
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.0e-14 82.4 150 35.3
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 6.5e-14 82.0 234 26.9
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 6.5e-14 82.0 184 32.6
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 6.5e-14 82.0 163 31.9
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.1e-13 81.3 199 29.6
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 1.4e-13 80.9 202 30.7
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 1.9e-13 80.5 137 36.5
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 2.5e-13 80.1 140 33.6
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 5.5e-13 79.0 151 35.1
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.5e-13 79.0 205 32.7
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 9.4e-13 78.2 216 27.8
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.6e-12 77.4 173 31.8
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 3.6e-12 76.3 210 30.0
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 4.7e-12 75.9 208 30.3
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 7.9e-12 75.1 191 30.4
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 1.0e-11 74.7 218 28.9
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 1.4e-11 74.3 152 36.2
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.3e-11 73.6 198 30.8
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 8.8e-11 71.6 151 34.4
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 1.1e-10 71.2 221 30.3
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 1.5e-10 70.9 191 29.8
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.4e-10 69.3 196 31.1
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.3e-09 67.8 139 32.4
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 4.8e-09 65.9 190 27.9
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 6.3e-09 65.5 162 30.9
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.1e-08 64.7 118 33.1
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 4.1e-08 62.8 166 30.1
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 7.0e-08 62.0 195 29.7
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 9.1e-08 61.6 180 28.3
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.6e-07 60.1 129 34.1
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 1.7e-06 57.4 218 25.7
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.2e-06 57.0 128 34.4
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 2.9e-06 56.6 172 26.7


User provided reference genes

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